This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB12.1

Pakistan/LOC_000SB12.1/2017-12
A. Zohaib, M. Saqib, M. A. Athar, M. H. Hussain, A. U. Sial, M. H. Tayyab, M. Batool, H. Sadia, Z. Taj, U. Tahir, M. Y. Jakhrani, J. Tayyab, M. A. Kakar, M. F. Shahid, T. Yaqub, J. Zhang, Q. Wu, F. Deng, V. M. Corman, S. Shen, I. Khan, Z. L. Shi, A.-U.-R. Sial, F. Ahmed, S. Faiz, M. Furqan, S. Shu & Z.-L. Shi

Wuhan Institute of Virology, Key Lab of Special Pathogens

Sample details

Collection date
2017-12
Earliest release date
2020-03-31
Sampling location
Pakistan
Isolate name
15B/Pakistan

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-28 13:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-03-31
INSDC accession S

Host

Host

Submission details

Submission ID
MN135938.1.S
Submitting group
Date submitted
2026-05-28 13:08:22 UTC
Date released
2026-05-28 13:12:39 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
32
Length S
219 (13.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A322T
  • A325G
  • G328A
  • T334G
  • A337G
  • C343T
  • G367A
  • C370T
  • A379G
  • T385C
  • G397A
  • C400T
  • C403A
  • C406T
  • G409C
  • G418A
  • G421A
  • A425T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
Deletions
N/A
Insertions
N/A

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