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LOC_000SB12.1
Download
Download FASTA
Download metadata TSV
India/LOC_000SB12.1/2017
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2017
Earliest release date
2020-03-22
Sampling location
India (Vadodara District, Gujarat State)
Isolate name
NIV1727150
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-03-22
INSDC accession L segment
MH396670.1
INSDC accession M segment
MH396671.1
INSDC accession S segment
MH396672.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH396670.1.L/MH396671.1.M/MH396672.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:03:18 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000SB12.1.embl
Alignment and QC
Total SNPs M segment
1241
Total inserted nucs M segment
11
Total deleted nucs M segment
41
Length M segment
5346 (99.5%)
Total SNPs S segment
246
Total inserted nucs S segment
63
Total deleted nucs S segment
53
Length S segment
1771 (97.5%)
Total SNPs L segment
1637
Total inserted nucs L segment
32
Length L segment
12127 (99.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
G
32
A
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
G
26
C
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
G
37
A
A
39
T
A
40
G
A
41
T
G
43
A
T
44
A
G
45
C
G
46
T
C
47
T
G
48
T
T
49
G
C
51
G
Show more
S segment
T
16
A
C
31
G
C
66
T
A
98
T
A
102
G
C
126
T
C
138
A
T
147
C
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
A
186
G
C
192
T
A
193
G
C
201
T
Show more
Deletions
M segment
5211-5214, 5244, 5268-5303
S segment
1570, 1653-1676, 1726-1753
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTATTTCTA
M segment
ins_5401:TGCGTGCCGCC
S segment
ins_0:GAAACACGT, ins_1699:CTGAACCTGAGCGCATAATGTTATGAGGAGATGGGAGCACTAGTGATTCGCGGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
N
GPC:
L
2
M
GPC:
F
3
L
GPC:
H
4
P
GPC:
F
5
L
GPC:
E
6
K
GPC:
H
7
S
GPC:
I
11
T
GPC:
V
14
I
GPC:
F
15
L
GPC:
I
18
L
GPC:
L
19
F
GPC:
G
23
S
GPC:
L
25
V
GPC:
A
26
T
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
S
52
G
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
V
246
I
NP:
R
270
K
NP:
A
307
V
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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