This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAMW.1

Display Name: Taiwan/LOC_000SAMW.1
C. H. Chen, M. T. Wan & J. W. Tsai

Sample details

Collection date (upper bound)
2005-11-07
Earliest release date
2005-11-07
Collection country
Taiwan
Isolate name
C87

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-06 18:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Tatung University, Bioengineening

INSDC

NCBI release date
2005-11-07
INSDC accession CV-A16

Alignment and QC metrics CV-A16

Length CV-A16
480
Total SNPs CV-A16
51
Total inserted nucs CV-A16
2
Total deleted nucs CV-A16
29
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
6.84%

Submission details

Submission ID
DQ231360.1.CV-A16
Submitting group
Date submitted
2025-11-06 18:10:38 UTC
Date released
2025-11-06 18:18:10 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C98G
  • C100G
  • A101G
  • T103A
  • A105C
  • T107A
  • A108C
  • A113T
  • A115G
  • A116G
  • C118G
  • A119G
  • A124C
  • C126G
  • C128G
  • T131A
  • G133C
  • A134C
    • Deletions
    94, 95, 121, 122, 140-152, 156-161, 167-171, 584
    Insertions
    ins_176:AA

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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