This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAMW.1

Spain/LOC_000SAMW.1/2011-10-20
A. Negredo, M. A. Habela, E. Ramirez de Arellano, F. Lasala, P. Lopez, A. Sarria, N. Labiod, R. Calero-Bernal, A. Tenorio, A. Estrada-Pena & P. Sanchez-Seco

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral Diseases

Sample details

Collection date
2011-10-20
Earliest release date
2019-05-11
Sampling location
Spain
Isolate name
Caceres/B 2011

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-05-11
INSDC accession S segment

Host

Host

Submission details

Submission ID
MH337846.1.S
Submitting group
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:03:18 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
34
Length S segment
495 (27.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150T
  • T159A
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C192T
  • C198T
  • G231A
  • G243A
  • T273C
  • G282T
  • T297C
  • A309G
  • G339A
  • C342A
  • T348C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K45R
Deletions
N/A
Insertions
N/A

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