This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAMW.1

USA/UNMC0294/2017-07-24
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2017-07-24
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Scottsbluff)
Isolate name
UNMC0294

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310089.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:57:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
81
Length
10206 (92.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS2B:I107T
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:I402T
  • capsid:I44T
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T227C
  • C340T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • A1683G
  • C1750T
  • C2304T
  • C2440T
  • C2466T
  • T2800C
  • C3051T
  • T3093C
  • G3510A
  • T3528C
  • C3969T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I107T

NS4B

  • NS4B:I240M

NS5

  • NS5:I402T

capsid

  • capsid:I44T

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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