This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAMW.1

Display Name: LOC_000SAMW.1/2009-07-09
P. Linsuwanon, J. Puenpa, K. Suwannakarn, V. Auksornkitti, P. Vichiwattana, S. Korkong, A. Theamboonlers & Y. Poovorawan

Sample details

Collection date
2009-07-09
Collection date (lower bound)
2009-07-09
Collection date (upper bound)
2009-07-09
Earliest release date
2012-07-29
Isolate name
TH_B521

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Faculty of Medicine, Chulanlongkorn University, Department of Pediatric

INSDC

NCBI release date
2012-07-29
NCBI update date
2012-07-29
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
591
Total SNPs
79
Total inserted nucs
0
Total deleted nucs
35
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
8.50%
Total stop codons
0

Submission details

Submission ID
JQ411796.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:04:18 UTC

Clade

Clade EV-D68
B1

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • A541T
  • A586T
  • A600G
  • G616A
  • G624A
  • T628C
  • G629A
  • C632T
  • A633G
  • C634T
  • T636A
  • T643C
  • A644T
  • T645A
  • G647A
  • T649C
  • G652A
  • C655T
    • Deletions
    688-722
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    VP2

  • VP2:S59A
  • VP2:R67K
  • VP2:S73A
  • VP2:N74G
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue