LOC_000SAMW.1

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India/LOC_000SAMW.1/2016

P. D. Yadav

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date

2016

Earliest release date

2020-03-22

Sampling location

India (Bhuj District, Gujarat State)

Isolate name

NIV164392

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-03-22

INSDC accession L

MH396661.1

INSDC accession M

MH396662.1

INSDC accession S

MH396663.1

Host

human (Homo sapiens)

Submission details

Submission ID

MH396661.1.L/MH396662.1.M/MH396663.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-07-03 09:31:12 UTC

Date released

2026-07-03 09:34:30 UTC

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000SAMW.1.embl

Alignment and QC

Total SNPs L

1656

Total inserted nucs L

Length L

12182 (100%)

Total SNPs M

660

Total inserted nucs M

Length M

5375 (100%)

Total SNPs S

230

Total inserted nucs S

Length S

1739 (99.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

A6G
A7C
G23T
A35G
G43T
T49C
T60C
C63G
C64T
T65C
T66C
T68C
G69A
G71C
C76T
C85T
G88A
G93A

M

T1C
T3A
C4T
A5C
A6C
A7T
C85T
T86C
T100C
A104T
A107G
G110A
C115T
A117G
C119T
T122C
C126T
A128G

S

T48C
G54A
A61G
C64T
G67A
T79C
A85G
G99A
A118G
C142T
T157C
C166T
C178A
T182C
G190A
G196A
C214T
C217T

Deletions

N/A

Insertions

L

ins_58:T, ins_11931:AT, ins_12054:TACAATTTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGATCTGAAGAGCACACTTATGAACTCAAGTAA

M

ins_0:AGACACACA, ins_5170:G

S

ins_1579:A, ins_1672:GACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCGCTTTTCCTCCGCAACCATGTCTGACAAACCCGATATGGC

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references