This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S77U.1

Italy/LOC_000S77U.1/2024-01-01_TO_2024-10-13
E. Pariani, A. Piralla, L. Pellegrinelli, F. Giardina, V. N. Porrello, G. Romano, C. Galli, L. Sandri, G. Ferrari, S. Binda, L. Vezzosi, G. Del Castillo, S. Buoro, D. Cereda & F. Baldanti

Fondazione IRCCS Policlinico San Matteo, Microbiology and Virology Department

Sample details

Collection date
2024-01-01/2024-10-13
Earliest release date
2024-10-13
Sampling location
Italy
Isolate name
EV-D68/ITA/PV-01021617/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-29 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-10-13
NCBI update date
2024-10-13
INSDC accession

Host

Host

Submission details

Submission ID
PQ426636.1
Submitting group
Date submitted
2026-05-29 16:00:06 UTC
Date released
2026-05-29 16:10:08 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
870
Total inserted nucs
6
Total unknown nucs
2
Length
6525 (88.5%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G756A
  • T768C
  • T780C
  • C801T
  • T807C
  • G834A
  • T837C
  • A846G
  • C855T
  • G861A
  • C867T
  • G876A
  • T879C
  • C891T
  • A915G
  • A927T
  • T942C
  • C948T
Deletions
N/A
Insertions

ins_3303:ATCCGG

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R67K
  • 2A:I71V
  • 2A:N136S
  • 2A:V144A

2B

  • 2B:N23S

2C

  • 2C:N30S
  • 2C:T34N
  • 2C:K58S
  • 2C:R72Q
  • 2C:R88K
  • 2C:V96M
  • 2C:S98A
  • 2C:A102T
  • 2C:I154V
  • 2C:N273D
  • 2C:T275A
  • 2C:V304I
  • 2C:T317I

3A

  • 3A:V12I
  • 3A:A13T
  • 3A:I68V

3C

  • 3C:V30I
  • 3C:Y31H
  • 3C:R55K
  • 3C:C93Y

3D

  • 3D:M11V
  • 3D:V29I
  • 3D:V88T
  • 3D:N95S
  • 3D:E101D
  • 3D:R132K
  • 3D:K139R
  • 3D:I212V
  • 3D:T258I
  • 3D:I261V
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:H332Y
  • 3D:V349L
  • 3D:I360V

VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:M148T
  • VP1:K168E

VP2

  • VP2:S59A
  • VP2:R67K
  • VP2:S73A
  • VP2:N74E
  • VP2:T76K
  • VP2:D136N
  • VP2:I146T
  • VP2:R151E
  • VP2:I167L
  • VP2:V195A
  • VP2:M222V
  • VP2:V225M
  • VP2:T247A

VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:D59E
  • VP3:N62D
  • VP3:E65Q
  • VP3:R68K
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:I153V
  • VP3:I163V
  • VP3:S180N
  • VP3:S204N
  • VP3:D208N
  • VP3:I216V
Deletions
N/A
Insertions

VP1

ins_VP1:306:RL

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