This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6H8.1

South_Africa/LOC_000S6H8.1/1984
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek, R. Swanepoel & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
1984
Earliest release date
2017-09-06
Sampling location
South Africa
Isolate name
SPU264_84_2_813058_L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 07:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession L

Host

Host

Submission details

Submission ID
MF511205.1.L
Submitting group
Date submitted
2026-06-09 07:35:05 UTC
Date released
2026-06-09 07:39:13 UTC

Files

Annotations

Alignment and QC

Total SNPs L
612
Total ambiguous nucs L
3
Length L
12086 (99.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • A35T
  • T49C
  • C63G
  • T65C
  • T70C
  • G80A
  • G93A
  • T118C
  • C148T
  • T163C
  • T214C
  • T229C
  • T253C
  • T254A
  • C266T
  • C313T
  • C326T
  • C331T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:D2N
  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:N206Y
  • RdRp:A263T
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:G778R
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:S789T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
Deletions
N/A
Insertions
N/A

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