This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S69R.1

France/LOC_000S69R.1/2019-03-29
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, M. Jeannoel, I. Schuffenecker, Q. Semanas & A. Oblette

Centre National de Reference Enterovirus et Parechovirus - CHU Lyon, Hospices Civils de Lyon

Sample details

Collection date
2019-03-29
Earliest release date
2025-07-12
Sampling location
France
Isolate name
S2_019068174901_C1_LYO_FRA_29_03_2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-29 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-07-12
NCBI update date
2025-07-12
INSDC accession

Host

Host

Submission details

Submission ID
PQ365606.1
Submitting group
Date submitted
2026-05-29 16:00:06 UTC
Date released
2026-05-29 16:10:08 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
46
Length
309 (4.17%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2600A
  • G2606A
  • T2618C
  • T2636A
  • T2648C
  • C2651T
  • A2654G
  • T2657C
  • C2672T
  • C2675T
  • T2678C
  • C2690T
  • A2696G
  • A2699G
  • C2702G
  • T2723C
  • A2730G
  • C2738A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K98E
  • VP1:R145E
  • VP1:F155Y
Deletions
N/A
Insertions
N/A

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