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LOC_000S69R.1
Download
Download FASTA
Download metadata TSV
Armenia/LOC_000S69R.1/2022
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
Sample details
Collection date
2022
Earliest release date
2025-03-02
Sampling location
Armenia
Isolate name
371-ARM-TI-2022
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-03-02
INSDC accession L
PQ878921.1
INSDC accession M
PQ878912.1
Host
Host
ticks (Ixodoidea)
Submission details
Submission ID
PQ878921.1.L/PQ878912.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-22 19:02:31 UTC
Date released
2026-09-22 19:07:58 UTC
Files
Annotations
LOC_000S69R.1.embl
Alignment and QC
Total SNPs L
81
Length L
437 (3.61%)
Total SNPs M
122
Length M
435 (8.11%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
124
G
A
126
T
T
131
A
C
133
T
A
135
G
T
139
G
T
154
C
T
160
C
T
163
C
G
166
A
G
172
T
G
175
A
G
178
C
G
190
T
T
214
A
G
217
A
T
218
C
C
223
T
Show more
M
A
4646
G
T
4649
C
A
4670
G
C
4671
T
A
4672
T
C
4673
T
A
4677
G
A
4678
G
G
4679
C
C
4685
T
T
4688
C
A
4691
G
A
4693
G
A
4694
T
A
4701
T
A
4702
T
T
4712
A
A
4713
G
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
1527
F
GPC:
K
1529
G
GPC:
E
1534
G
GPC:
K
1537
L
GPC:
N
1541
D
GPC:
T
1542
A
GPC:
Q
1546
K
GPC:
S
1564
D
GPC:
T
1567
A
GPC:
A
1568
T
GPC:
A
1570
T
GPC:
S
1571
N
GPC:
E
1575
D
GPC:
V
1577
F
GPC:
V
1595
I
GPC:
F
1596
I
GPC:
M
1597
I
GPC:
F
1600
L
Show more
RdRp
RdRp:
Y
17
F
RdRp:
S
19
T
RdRp:
N
20
S
RdRp:
Q
34
H
RdRp:
K
53
E
RdRp:
H
56
P
RdRp:
S
57
T
RdRp:
Y
58
D
RdRp:
H
59
P
RdRp:
Y
60
H
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
Q
74
L
RdRp:
R
80
K
RdRp:
S
85
D
RdRp:
L
90
I
RdRp:
L
94
M
RdRp:
G
113
N
RdRp:
I
114
V
RdRp:
D
135
E
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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