This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S69R.1

Russia/LOC_000S69R.1/2016
V. G. Dedkov, M. Y. Shchelkanov, B. T. Bushkieva, T. A. Rudenko, O. V. Kurdyukova, I. V. Galkina, M. V. Sapotsky, E. A. Blinova, S. D. Dzhambinov, G. A. Shipulin & M. V. Safonova

Central Research Institute for Epidemiology

Sample details

Collection date
2016
Earliest release date
2017-09-17
Sampling location
Russia (Kalmykia)
Isolate name
Russia_Kalmykia_Shch_2_2016

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-09-17
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
KY982865.1.L/KY982867.1.M/KY982869.1.S
Submitting group
Date submitted
2026-07-08 10:17:01 UTC
Date released
2026-07-08 10:20:21 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1063
Total inserted nucs M segment
1
Total deleted nucs M segment
3
Length M segment
5290 (97%)
Total SNPs L segment
1329
Total inserted nucs L segment
26
Length L segment
12111 (99.8%)
Total SNPs S segment
256
Total inserted nucs S segment
14
Length S segment
1670 (91.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • G57A
  • T58C
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73T
  • C76A
  • A91G
  • G93A
  • C100T
  • A109G

M segment

  • A57T
  • A60T
  • T63C
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • T79C
  • G80A
  • C88T
  • T96C
  • T98C
  • C99T
  • G103A
  • A104G
  • A108G
  • T109C

S segment

  • A8T
  • T16A
  • T30A
  • C31G
  • T33C
  • G34T
  • A51G
  • T63C
  • A65G
  • A93G
  • A98T
  • C99T
  • T117C
  • G118A
  • C126T
  • T141C
  • C150T
  • G155A
Deletions

M segment

326-328
Insertions

L segment

ins_67:C, ins_11928:CT, ins_12108:CATTATTTGCAGGGTGTGGGGGG

M segment

ins_5166:C

S segment

ins_0:TCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15S
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24S
  • GPC:G26A
  • GPC:N31G
  • GPC:H33N
  • GPC:V34T

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:V193M
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223L
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N448S
Deletions

GPC

GPC:77
Insertions
N/A

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