This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Taiwan/LOC_000S69R.1
S. C. Chang, W. C. Li, G. W. Chen, K. C. Tsao, C. G. Huang, Y. C. Huang, C. H. Chiu, C. Y. Kuo, K. N. Tsai, S. R. Shih, T. Y. Lin, S.-C. Chang, W.-C. Li, S.-R. Shih & T.-Y. Lin

Chang Gung University, Research Center for Emerging Viral Infections

Sample details

Earliest release date
2011-06-30
Sampling location
Taiwan
Isolate name
TW/2639/04

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-06-30
NCBI update date
2012-04-19
INSDC accession

Submission details

Submission ID
GQ231928.1
Date submitted
2026-09-27 20:55:42 UTC
Date released
2026-09-27 20:58:55 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1438
Total inserted nucs
20
Total deleted nucs
14
Length
7414 (100%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • C28T
  • T36C
  • T48A
  • T51C
  • A54T
  • T61C
  • A76G
  • T95C
  • T99A
  • C106A
  • T138C
  • T142C
  • G143A
  • G145A
  • A148G
  • T149C
  • A150T
  • C156T
Deletions
20, 101-103, 119, 120, 693, 707, 743, 7333, 7337-7340
Insertions
ins_89:A, ins_128:C, ins_701:CT, ins_738:GCT, ins_7326:GG, ins_7328:A, ins_7408:AAAAAAAAAA

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102Q
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:H31Y
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

2C

  • 2C:I21V
  • 2C:F22S
  • 2C:I37V
  • 2C:V60I
  • 2C:A75V
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T251A
  • 2C:T271S
  • 2C:N315S

3A

  • 3A:E39D

3B

  • 3B:P9Q
  • 3B:I10V
  • 3B:V15T

3C

  • 3C:I15V
  • 3C:A18V
  • 3C:I36V
  • 3C:V49I
  • 3C:I54V
  • 3C:V56I
  • 3C:V75I
  • 3C:C89F
  • 3C:V93N
  • 3C:T95S
  • 3C:G96T
  • 3C:I109M
  • 3C:P144A
  • 3C:I157V
  • 3C:A169G

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T44H
  • 3D:Q56H
  • 3D:H68Y
  • 3D:V74I
  • 3D:T75K
  • 3D:Q76E
  • 3D:D89E
  • 3D:K94Q
  • 3D:Y106N
  • 3D:V134I
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:L165I

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N

VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:M198I
  • VP2:T200A
  • VP2:F224Y

VP3

  • VP3:D93N
  • VP3:M100L
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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