This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S69R.1

Kazakhstan/LOC_000S69R.1/2011
A. N. Lukashev, E. Y. Shumilina, I. S. Belalov, O. E. Ivanova, T. P. Eremeeva, V. I. Reznik, O. E. Trotsenko, J. F. Drexler & C. Drosten

Chumakov Institute of Poliomyelitis and Viral Encephalitides

Sample details

Collection date
2011
Earliest release date
2014-02-19
Sampling location
Kazakhstan
Isolate name
41555_CVA16_KAZ_2011

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-02-19
NCBI update date
2014-04-03
INSDC accession

Submission details

Submission ID
KC879548.1
Submitting group
Date submitted
2026-07-28 16:31:52 UTC
Date released
2026-07-28 16:34:49 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
219
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T2448G
  • G2452T
  • G2453C
  • A2454T
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2499C
  • G2500T
  • G2502C
  • C2503T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3S
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26M
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
Deletions
N/A
Insertions
N/A

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