This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S69R.1

unknown/LOC_000S69R.1/unknown
A. D. Barrett, R. B. Tesch, C. T. Davis & D. W. Beasley

Sample details

Earliest release date
2007-05-18

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2007-05-18
NCBI update date
2007-05-18
INSDC accession

Submission details

Submission ID
CS568916.1
Submitting group
Date submitted
2026-09-08 14:00:36 UTC
Date released
2026-09-08 14:01:45 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
40
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:E249G
  • NS5:K177R
  • NS5:A804V
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V156I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • G931A
  • C1065T
  • T1442C
  • C1465T
  • G1851A
  • C2466T
  • C2656T
  • C3774T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • G5634A
  • T5652C
  • C6138T
  • A6204G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:E249G

NS5

  • NS5:A804V

env

  • env:V159A
  • env:L167F

prM

  • prM:V156I
Deletions
N/A
Insertions
N/A

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