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LOC_000S617.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000S617.1/2016-05-14
A. Volynkina,
E. Kotenev &
A. Kolosov
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
Sample details
Collection date
2016-05-14
Earliest release date
2020-07-27
Sampling location
Russia
Isolate name
4-ASTR/TI-2016
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-07-27
INSDC accession L
MN624946.1
INSDC accession M
MN624715.1
INSDC accession S
MN624484.1
Submission details
Submission ID
MN624946.1.L/MN624715.1.M/MN624484.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:32 UTC
Date released
2026-02-27 15:40:41 UTC
Host
Host
Hyalomma marginatum
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000S617.1.embl
Alignment and QC
Total SNPs L
45
Length L
437 (3.61%)
Variant L
False
Total SNPs M
75
Length M
435 (8.11%)
Variant M
False
Total SNPs S
85
Length S
538 (32.2%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
T
218
C
T
229
C
A
240
C
T
241
C
T
253
C
T
254
A
A
262
G
G
264
A
C
265
T
A
268
G
C
276
T
Show more
M
C
4644
T
T
4649
C
C
4652
T
T
4661
G
A
4664
G
C
4671
T
T
4676
C
A
4694
T
C
4697
T
A
4713
G
A
4730
G
A
4736
G
T
4742
A
T
4743
C
G
4745
A
C
4748
T
A
4751
G
G
4757
A
Show more
S
C
115
T
A
121
G
G
134
A
C
139
T
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
G
189
A
T
199
C
C
217
T
C
244
T
T
250
G
G
262
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
1527
Y
GPC:
E
1534
D
GPC:
N
1541
D
GPC:
S
1564
D
GPC:
S
1589
G
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
V
1595
F
GPC:
M
1597
V
GPC:
F
1600
L
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1652
R
GPC:
N
1655
S
GPC:
K
1661
R
NP
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
R
156
K
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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