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LOC_000S5WH.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000S5WH.1/1967
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1967
Earliest release date
2017-04-02
Sampling location
Russia
Isolate name
UCCR4405
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484030.1
INSDC accession M
KY484029.1
INSDC accession S
KY484028.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY484030.1.L/KY484029.1.M/KY484028.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-13 11:38:45 UTC
Date released
2026-08-13 11:42:21 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000S5WH.1.embl
Alignment and QC
Total SNPs M
1045
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5364 (100%)
Total SNPs S
254
Total inserted nucs S
1
Total deleted nucs S
2
Length S
1671 (100%)
Total SNPs L
1310
Total inserted nucs L
43
Length L
12151 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
C
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
C
76
A
A
91
G
G
93
A
C
100
T
A
109
G
Show more
M
T
40
C
G
50
A
A
51
G
A
61
T
A
64
C
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
C
85
T
T
86
C
C
92
T
A
99
G
T
100
C
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
C
97
T
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
123
A
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
Show more
Deletions
M
333-335
S
31, 32
Insertions
L
ins_25:T, ins_67:C, ins_11928:CT, ins_12096:TCATACCAGTTTCATTATTTGAAGGGTGTGGGGGGAACG
M
ins_5171:T
S
ins_1579:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
A
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
S
GPC:
E
19
G
GPC:
T
20
A
GPC:
G
22
R
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
G
23
E
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
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RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
448
S
RdRp:
N
453
S
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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