This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000RKJV.1

China/LOC_000RKJV.1/2008-01-01_TO_2008-12-22
D. He, R.-T. Bai, Y. Zhang, Z.-L. Shan, L. Li, J. Liu, D.-M. Yan & W.-B. Xu

Chaoyang Center for Disease Control and Prevention, Pathogenic Microorganism Laboratory

Sample details

Collection date
2008-01-01/2008-12-22
Earliest release date
2008-12-22
Sampling location
China (Beijing)
Isolate name
CY6/BJ/CHN/2008

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-22
NCBI update date
2016-07-24
INSDC accession

Host

Host
Is lab host
True

Submission details

Submission ID
FJ469152.1
Submitting group
Date submitted
2026-10-23 14:52:55 UTC
Date released
2026-10-23 14:55:19 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
161
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • A2504C
  • T2508C
  • T2513A
  • C2527A
  • A2528G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
Deletions
N/A
Insertions
N/A

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