This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QPMM.1

Turkey/LOC_000QPMM.1/2020-04-29
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2020-04-29
Earliest release date
2026-04-19
Sampling location
Turkey (Sivas, Sarkisla, Ortatopac)
Isolate name
TRSCU/RP21/Sarkisla/2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 07:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-19
INSDC accession L segment
INSDC accession M segment

Host

Host

Submission details

Submission ID
PX875132.1.L/PX875026.1.M
Submitting group
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
986
Total inserted nucs M segment
1
Total deleted nucs M segment
3
Length M segment
5203 (95.4%)
Total SNPs L segment
1304
Total inserted nucs L segment
31
Total deleted nucs L segment
2
Total ambiguous nucs L segment
5
Length L segment
12048 (99.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

L segment

  • A91G
  • G93A
  • C100T
  • A109G
  • T131A
  • T139C
  • A147G
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • C208T
  • T229C
  • A240C
  • T250C
  • T254A

M segment

  • T36A
  • G46A
  • A47G
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • T79C
  • G80A
  • T81C
  • C88T
  • T96C
  • T98C
  • C99T
  • G103A
  • A104G
  • A108G
Deletions

L segment

12093, 12094

M segment

326-328
Insertions

L segment

ins_11924:G, ins_12108:TTCATTATTTGAAGGGTGTGGGGGGAACGA

M segment

ins_5167:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16C
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23K
  • GPC:H24L
  • GPC:G26T
  • GPC:N31G
  • GPC:H33N

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N453S
Deletions

GPC

GPC:77
Insertions
N/A

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