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LOC_000QN0X.1
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Download FASTA
Download metadata TSV
Senegal/LOC_000QN0X.1/2013-01-01
M. H. D. Ndione,
G. Mencattelli,
M. M. Diagne,
G. Savini,
F. Monaco,
V. Di Lollo,
V. Curini,
C. Camma &
O. Faye
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases
Sample details
Collection date
2013
Earliest release date
2023-03-20
Sampling location
Senegal (Barkedji region)
Isolate name
SN2013 260164
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-22 14:38
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-03-20
NCBI update date
2023-03-20
INSDC accession
ON813210.1
Host
Host
mosquitos (Culex neavei)
Submission details
Submission ID
ON813210.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000QN0X.1.embl
Alignment and QC
Total SNPs
430
Total inserted nucs
1
Total deleted nucs
1
Total ambiguous nucs
13
Total unknown nucs
1
Length
10967 (99.3%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
A
70
S
NS1:
D
208
E
NS2A:
H
119
Y
NS2B:
I
31
V
NS4A:
V
85
I
NS4A:
P
100
S
NS4B:
E
249
D
NS5:
K
177
R
NS5:
R
224
Q
capsid:
S
11
N
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
6
A
T
7
C
C
8
A
G
128
A
G
186
A
T
195
A
T
234
C
C
282
T
G
354
A
G
447
T
C
483
T
G
492
A
G
495
T
C
561
T
C
600
T
T
606
C
A
630
G
G
636
A
Show more
Deletions
10966
Insertions
ins_10488:G
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
A
70
S
NS1:
D
208
E
NS2A
NS2A:
H
119
Y
NS2B
NS2B:
I
31
V
NS2B:
V
103
A
NS3
NS3:
P
249
T
NS3:
T
356
I
NS4A
NS4A:
A
85
I
NS4A:
P
100
S
NS4B
NS4B:
E
249
D
NS5
NS5:
R
224
Q
capsid
capsid:
S
11
N
env
env:
R
93
K
env:
V
159
I
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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