This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QLJW.1

USA/FDAARGOS_1629/2014-01-01
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Collection date
2014
Earliest release date
2022-03-22
Sampling location
USA
Isolate name
FDAARGOS_1629

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-03-22
NCBI update date
2022-03-22
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OM202936.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Length
10901 (98.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:R205K
  • NS1:I236V
  • NS1:S288R
  • NS2A:R188K
  • NS2B:A103V
  • NS2B:V120I
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:F119L
  • NS5:V49I
  • NS5:K177R
  • NS5:K314R
  • capsid:K104R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V304I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C204T
  • C340T
  • A407G
  • C435T
  • A630G
  • C969T
  • C1065T
  • C1170T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • G1876A
  • C2304T
  • C2466T
  • T2898C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:R205K
  • NS1:I236V
  • NS1:S288R

NS2A

  • NS2A:R188K

NS2B

  • NS2B:V120I

NS4B

  • NS4B:F119L

NS5

  • NS5:V49I
  • NS5:K314R

capsid

  • capsid:K104R

env

  • env:V159A
  • env:L167F
  • env:V304I
Deletions
N/A
Insertions
N/A

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