This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QL8H.1

USA/FDAARGOS_1652/2018-01-01
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Collection date
2018
Earliest release date
2022-10-08
Sampling location
USA
Isolate name
FDAARGOS_1652

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-10-08
NCBI update date
2022-10-08
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OM202925.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
74
Total inserted nucs
39
Total deleted nucs
37
Length
3761 (34.1%)
Amino Acid Mutations from founder clade
  • NS4B:I240M
  • NS5:K177R
  • NS5:A860T
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A7395C
  • C7419T
  • C7527T
  • C7602T
  • T7608C
  • A7635G
  • A7695G
  • C7731T
  • G7812A
  • C7893T
  • T7938C
  • C8167A
  • T8235C
  • C8361A
  • T8451C
  • A8454G
  • C8491T
  • C8565T
Deletions

10470, 10471, 10881, 10882, 10963, 10966-10968, 10984-11004, 11012-11019
Insertions

ins_10872:TCA, ins_10886:ACTTT, ins_10889:TTT, ins_10901:TTT, ins_10906:TG, ins_10914:TGGCTTGGAAGA, ins_10926:GGAGG, ins_10940:GCCTCC

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:I240M

NS5

  • NS5:A860T
Deletions
N/A
Insertions
N/A

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