LOC_000QKSF.1

Turkey/LOC_000QKSF.1/2023-08-14

Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date

2023-08-14

Earliest release date

2026-04-19

Sampling location

Turkey (Sivas, Susehri, Citlice)

Isolate name

TRKAU/T-533-3/Susehri/2023

Data use terms

Changed	User	Data use terms
2026-05-07 10:31	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2026-04-19

INSDC accession L

PX875055.1

INSDC accession M

PX874968.1

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)

Submission details

Submission ID

PX875055.1.L/PX874968.1.M

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-07 10:31:37 UTC

Date released

2026-05-07 10:45:54 UTC

Files

Annotations

LOC_000QKSF.1.embl

Alignment and QC

Total SNPs M

1061

Total inserted nucs M

Total deleted nucs M

Length M

5333 (99.4%)

Total SNPs L

1303

Total inserted nucs L

Length L

12122 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G23T
A35G
A42T
G43C
T49C
T52A
A53G
T58A
C59T
C63T
C64G
T66C
A72G
A73C
A91G
G93A
C100T
A109G

M

T40A
G50A
A51G
T67C
T68C
A69G
T71A
G76C
A80G
G84A
T86C
A88G
C92T
T94C
T100C
T102C
C103T
A108G

Deletions

M

327-329

Insertions

L

ins_67:C, ins_11924:G, ins_12085:TT, ins_12108:TTATTTGAAGGGTGTGGGGGGAACGA

M

ins_5175:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references