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LOC_000QHTF.1
Download
Download FASTA
Download metadata TSV
Viet_Nam/LOC_000QHTF.1/2014-10-20
V. M. T. Hoang
Oxford Clinical Research Unit, Emerging Infection
Sample details
Collection date
2014-10-20
Earliest release date
2019-03-26
Sampling location
Viet Nam
Isolate name
C4-1
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-03-26
NCBI update date
2019-03-26
INSDC accession
MH716248.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH716248.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:39:51 UTC
Clade
Clade EV-A71
C4
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1462
Total inserted nucs
7
Total deleted nucs
11
Length
7389 (99.8%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
A
8
G
G
9
C
C
28
T
T
36
C
T
48
A
T
51
C
A
54
T
T
61
C
T
63
C
C
64
T
A
76
G
C
90
T
T
95
C
T
99
C
G
100
A
C
106
A
T
110
C
C
122
T
Show more
Deletions
21, 103, 104, 119, 120, 693, 707, 743, 7333-7335
Insertions
ins_128:C, ins_701:CT, ins_738:GCT, ins_7327:G
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
N
57
D
2A:
R
68
M
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
Q
2A:
S
129
N
2B
2B:
R
11
D
2B:
H
31
Y
2B:
V
47
I
2B:
S
85
A
2B:
M
95
I
2C
2C:
I
21
V
2C:
F
22
S
2C:
I
37
V
2C:
K
41
R
2C:
V
60
I
2C:
A
75
V
2C:
I
81
S
2C:
R
151
H
2C:
A
173
T
2C:
V
200
I
2C:
T
271
S
2C:
N
315
S
3A
3A:
E
39
D
3A:
T
47
V
3B
3B:
P
9
Q
3B:
I
10
V
3B:
V
15
A
3C
3C:
A
18
V
3C:
I
36
V
3C:
I
54
V
3C:
V
75
I
3C:
C
89
F
3C:
V
93
N
3C:
T
95
S
3C:
G
96
T
3C:
I
109
M
3C:
P
144
A
3C:
I
157
V
3C:
I
158
V
3C:
A
169
G
3D
3D:
M
6
V
3D:
R
10
K
3D:
V
33
I
3D:
T
44
H
3D:
V
74
I
3D:
T
75
K
3D:
Q
76
E
3D:
D
89
E
3D:
K
94
Q
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
V
3D:
R
140
K
3D:
L
143
F
3D:
N
154
Y
3D:
S
163
R
3D:
L
165
I
3D:
R
169
K
Show more
VP1
VP1:
K
18
R
VP1:
P
22
H
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
E
244
K
VP1:
S
246
P
VP1:
S
275
A
VP1:
D
282
N
VP1:
I
284
V
VP1:
T
289
A
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
S
144
T
VP2:
M
198
I
VP2:
T
200
A
VP2:
F
224
Y
VP3
VP3:
D
93
N
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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