This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QHSH.1

South_Africa/KNP17MP720/2017-01-01
C. MacIntyre, M. M. Guarido, M. A. Riddin, T. Johnson, L. Braack, M. Schrama, E. Gorsich, A. P. G. Almeida, M. Venter, M. Guarido & M. Scharama

University of Pretoria, Medical Virology

Sample details

Collection date
2017
Earliest release date
2022-08-23
Sampling location
South Africa (Kruger National Park, Mpumalanga)
Isolate name
KNP17MP720

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-08-23
NCBI update date
2023-11-14
INSDC accession

Host

Host

Submission details

Submission ID
OL411958.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
34
Total deleted nucs
1527
Length
226 (15.9%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A9066G
  • C9072T
  • C9081T
  • A9084C
  • G9087A
  • G9093A
  • A9096C
  • T9108C
  • C9123G
  • A9126G
  • G9138A
  • C9144T
  • G9147A
  • G9153T
  • T9156A
  • T9159C
  • A9168G
  • C9171T
Deletions

9255-10419, 10425-10786
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue