This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QH8L.1

USA/BSL73-12/unknown
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
BSL73-12

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
NCBI update date
2022-07-30
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OK573275.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
127
Total inserted nucs
3307
Length
14310 (99.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I236V
  • NS2B:A103V
  • NS2B:V119I
  • NS3:T249P
  • NS3:I356T
  • NS3:I462V
  • NS4A:A58T
  • NS4A:V85A
  • NS4A:V89A
  • NS4B:V112A
  • NS5:K177R
  • NS5:K314R
  • capsid:K103M
  • env:M46T
  • env:K93R
  • env:T126I
  • env:I159V
  • prM:K116R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G327T
  • T348C
  • A404T
  • C562T
  • A630G
  • A812G
  • T825C
  • G1011T
  • T1103C
  • G1104A
  • C1164T
  • A1248G
  • A1311G
  • C1377T
  • G1440A
  • C1465T
  • T1681C
  • G1815A
Deletions
N/A
Insertions

ins_10492:G, ins_10829:AAACACAAAGTTAGGTAACTTTGTGTTTGAGGGTCTTTTCATCATGTCTCTGTGGTCTGATCTCCATGCCATACCAACAGCCACTGTCAGTTTGGTAGCGCAGTGGTGG, ins_10839:CTCCTGCAGCACCAATCTGTTATCAGCTTTCCGCTCTCTGTGGTGGTGCGAGTGGCA, ins_10859:CTCACTCAGGGTGACC, ins_10871:CAGTAATCGAAATCAATCTCTACCCGGCCTTCGTCCCATGGGCCCTGGTTTTGTGTCTTGTACCCAGGTCTCCGATTGTGATTGCTTCGTGGTCCCGCCAGTGTGACTGGTATTATCAAGTCACTCTC,...

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2B

  • NS2B:V119I

NS3

  • NS3:I462V

NS4A

  • NS4A:A58T
  • NS4A:V89A

NS4B

  • NS4B:V112A

NS5

  • NS5:K314R

capsid

  • capsid:K103M

env

  • env:M46T
  • env:L167F

prM

  • prM:K116R
Deletions
N/A
Insertions
N/A

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