This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QGUE.1

USA/BSL12-13/unknown
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
BSL12-13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
NCBI update date
2022-07-30
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OK573263.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
104
Total inserted nucs
6
Total deleted nucs
6
Length
10997 (99.7%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:M29I
  • NS1:L169M
  • NS2B:A103F
  • NS3:T249P
  • NS3:I356T
  • NS3:S467L
  • NS4A:V85T
  • NS5:K177R
  • NS5:A757V
  • capsid:I111S
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V431I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • T297C
  • T428G
  • A630G
  • C660T
  • T699C
  • C933T
  • T1032C
  • C1134T
  • T1442C
  • A1458G
  • C1465T
  • A1683G
  • T1881C
  • T1908C
  • A2208G
  • G2257A
  • C2466T
Deletions

10996-11000, 11015
Insertions

ins_10964:C, ins_10979:ATTGT

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:M29I
  • NS1:L169M

NS2B

  • NS2B:V103F

NS3

  • NS3:S467L

NS4A

  • NS4A:A85T

NS5

  • NS5:A757V

capsid

  • capsid:I111S

env

  • env:V159A
  • env:L167F
  • env:V431I
Deletions
N/A
Insertions
N/A

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