This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QGSJ.1

USA/13141366/2013-08-20
S. M. Bialosuknia, A. P. II Dupuis, S. D. Zink, C. A. Koetzner, J. G. Maffei, J. C. Owen, H. Landwerlen, L. D. Kramer & A. T. Ciota

New York State Department of Health, Wadsworth Center, Arbovirus Laboratory

Sample details

Collection date
2013-08-20
Earliest release date
2022-04-03
Sampling location
USA (Erie County, NY)
Isolate name
13141366

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-04-03
NCBI update date
2022-04-03
INSDC accession

Host

Host

Submission details

Submission ID
OK631659.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
71
Length
11019 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:L71F
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:N148S
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • A908G
  • T1392C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • C3372T
  • C3501T
  • T3528C
  • C3912T
  • C3969T
  • G4088A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

NS5

  • NS5:L71F

env

  • env:V159A
  • env:L167F

prM

  • prM:N148S
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue