This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QGPQ.1

USA/BSL21-13/unknown
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
BSL21-13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
NCBI update date
2022-07-30
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OK573259.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
56
Total inserted nucs
40
Total deleted nucs
36
Length
11028 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:M88T
  • NS2B:A103V
  • NS3:E180D
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:R546S
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G19A
  • T42A
  • A630G
  • T1442C
  • C1465T
  • C1557T
  • C1953T
  • G2124A
  • C2466T
  • C2787T
  • A2844G
  • C3300T
  • T3363C
  • T3531C
  • T4101C
  • C4107T
  • A4245T
  • T4481C
Deletions

10982-11017
Insertions

ins_0:ACTGTGTTAATTGTTGTTAATCCTCACAAACACTACTA, ins_11023:AA

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2B

  • NS2B:M88T

NS3

  • NS3:E180D

NS5

  • NS5:R546S

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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