This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QGNS.1

USA/BSL22-13/unknown
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
BSL22-13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
NCBI update date
2022-07-30
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OK573258.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Total deleted nucs
249
Length
10748 (99.7%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T108M
  • NS2A:V58I
  • NS2A:S185T
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:Y176N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C450T
  • C531T
  • A630G
  • C1137T
  • T1442C
  • C1465T
  • T1492A
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • C2792T
  • T3399C
  • C3501T
Deletions

10766-10864, 10868-11017
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T108M

NS2A

  • NS2A:V58I
  • NS2A:S185T
  • NS2A:R188K

NS4A

  • NS4A:A85V

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F
  • env:Y176N
Deletions
N/A
Insertions
N/A

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