This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QD6U.1

Guinea/LOC_000QD6U.1/2022-04-08
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2022-04-08
Earliest release date
2024-10-02
Sampling location
Guinea (N'Zerekore)
Isolate name
5542

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 07:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-10-02
INSDC accession S segment

Host

Host

Submission details

Submission ID
PQ361725.1.S
Submitting group
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
253
Total inserted nucs S segment
11
Total unknown nucs S segment
1
Length S segment
1662 (91.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G4T
  • T16A
  • T30A
  • C31G
  • T33C
  • G34T
  • A51G
  • T63C
  • A65G
  • A98T
  • C99T
  • A105G
  • G118A
  • C123T
  • C126T
  • T141C
  • C150T
  • G155A
Deletions
N/A
Insertions

S segment

ins_0:AATAAACAAGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:P192L
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K
Deletions
N/A
Insertions
N/A

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