This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QCVG.1

Italy/LOC_000QCVG.1/2020-10-01
G. Mencattelli, V. Curini, V. Di Lollo, A. Polci, C. Pinoni, I. Mangone, F. Monaco & G. Savini

Istituto Zooprofilattico Sperimentale Abruzzo e Molise, Virology Unit

Sample details

Collection date
2020-10-01
Earliest release date
2022-02-01
Sampling location
Italy (Campania region)
Isolate name
WNV 362447/20 Lin1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-02-01
NCBI update date
2022-02-01
INSDC accession

Host

Host

Submission details

Submission ID
MW627239.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
459
Total ambiguous nucs
2
Length
10989 (99.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS2B:M99T
  • NS4B:L96I
  • NS4B:E249D
  • NS5:K177R
  • env:A51T
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A44G
  • A108G
  • T195A
  • T234C
  • G354A
  • T367C
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T666C
  • C672T
  • G786A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S

NS2B

  • NS2B:M99T
  • NS2B:V103A

NS3

  • NS3:P249T
  • NS3:T356I

NS4A

  • NS4A:A85V

NS4B

  • NS4B:L96I
  • NS4B:E249D

env

  • env:A51T
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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