This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QCTL.1

North_Macedonia/LOC_000QCTL.1/2023
G. Bosevska, P. Emmerich, R. von Possel, E. G. Toth, D. Osmani & D. Cadar

Bernhard Nocht Institute for Tropical Medicine, Virus Genomics and Evolution

Sample details

Collection date
2023
Earliest release date
2024-07-06
Sampling location
North Macedonia
Isolate name
Kuchica-2713

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 07:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-07-06
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
PP963968.1.L/PP963969.1.M/PP963970.1.S
Submitting group
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1094
Total inserted nucs M segment
9
Total deleted nucs M segment
3
Length M segment
5388 (98.6%)
Total SNPs S segment
321
Total inserted nucs S segment
52
Total deleted nucs S segment
44
Length S segment
1814 (100%)
Total SNPs L segment
1298
Total inserted nucs L segment
239
Length L segment
12347 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • C59T
  • C63G
  • C64T
  • T65C
  • T67C
  • A72G
  • A73T
  • A91G
  • G93A
  • C100T
  • A109G
  • T131A

M segment

  • A1G
  • A3C
  • G4C
  • A5T
  • A6C
  • A7C
  • T8A
  • A9C
  • T36C
  • G46A
  • A47G
  • A57T
  • T63C
  • T64C
  • G65A
  • T67A
  • G72C
  • A76G

S segment

  • G1T
  • C3T
  • G4A
  • C5G
  • T6C
  • T7G
  • G10C
  • C11T
  • T16A
  • C31G
  • T33C
  • G34T
  • A51G
  • T63C
  • A65G
  • A93G
  • A98T
  • C99T
Deletions

M segment

326-328

S segment

1653-1696
Insertions

L segment

ins_0:GACCATCTAGCGACCTCCACTTCAGTCACTGGCTGCAACAGTCCAAATGATTATTGTAATGCCCATTTCTTTGGCTAGCATGGATG, ins_25:T, ins_57:AT, ins_11928:CG, ins_12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_12108:AATGCAGAGCAGCTAGCTCGTTTGAGAGCTTTGATGCTGGCAACTACTATGGTATAGACTGTCTCGTTTGCCCTTGGGACATTGAAAGACAGTGGAGGTCGCTAGATGG

M segment

ins_0:CATCTAGC, ins_5167:T

S segment

ins_0:GACCATCTAGCGACCTCGACCA, ins_1770:ACAC, ins_1806:GGTGCATGTAGATCCTGTTCTGCTGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15L
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24P
  • GPC:G26A
  • GPC:N31G
  • GPC:T32A
  • GPC:H33N

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:I131M
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:A202V
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N390S
Deletions

GPC

GPC:77
Insertions
N/A

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