This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QCCH.1

Namibia/M6831-NA-2020/2020-01-01
H. D. Guggemos, M. Fendt, C. Hieke, V. Heyde, J. K. E. Mfune, C. Borgemeister & S. Junglen

Institute of Virology, Charite - Universitaetsmedizin Berlin

Sample details

Collection date
2020
Earliest release date
2021-03-30
Sampling location
Namibia
Isolate name
M6831-NA-2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-03-30
NCBI update date
2021-03-30
INSDC accession

Host

Host

Submission details

Submission ID
MW383509.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
229
Length
1032 (9.36%)
Amino Acid Mutations from founder clade
  • env:K71R
  • env:T159I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G1098A
  • T1107C
  • G1113A
  • G1116A
  • G1125C
  • G1131T
  • C1134G
  • T1143C
  • C1146T
  • T1149C
  • T1150C
  • G1152A
  • T1155C
  • A1156T
  • C1158A
  • C1164T
  • T1167C
  • C1168T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159I
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
Deletions
N/A
Insertions
N/A

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