This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QA41.1

unknown/TWN3145/unknown
J. A. Kaiser, K. L. Carpio, H. Luo, S. G. Widen, T. G. Wood, P.-Y. Shi, C. Y. H. Huang, S. Higgs, T. Wang & A. D. T. Barrett

University of Texas Medical Branch, Pathology

Sample details

Earliest release date
2023-03-26
Isolate name
TWN3145

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-03-26
NCBI update date
2023-03-26
INSDC accession

Host

Host

Submission details

Submission ID
MT840695.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:55:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
15
Length
11023 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:K104R
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:W103Y
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1428T
  • C1465T
  • T1855C
  • C3880T
  • C4107T
  • A4922G
  • G5280A
  • T6405C
  • C7015T
  • G7029T
  • G7223A
  • G7224T
  • T8235C
  • C10338T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:H119Y

NS3

  • NS3:K104R

NS4B

  • NS4B:W103Y

env

  • env:L167F
Deletions
N/A
Insertions
N/A

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