This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q9QV.1

China/LOC_000Q9QV.1
L. Li, Y. He, H. Yang, J. Zhu, X. Xu, J. Dong, Y. Zhu & Q. Jin

National Institute For Viral Disease Control and Prevention, Chinese CDC, The State Key Laboratory of Molecular Virology and Genetic Engineering

Sample details

Earliest release date
2005-08-15
Sampling location
China (Shenzhen)
Isolate name
shzh04-23

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-16 08:46insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2005-08-15
NCBI update date
2016-07-26
INSDC accession

Host

Host

Submission details

Submission ID
AY895141.1
Submitting group
Date submitted
2026-04-16 08:46:33 UTC
Date released
2026-04-16 08:49:01 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
544
Total inserted nucs
4
Total deleted nucs
2
Length
3202 (43.2%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T138C
  • T142C
  • G143A
  • A148G
  • T149C
  • G157A
  • C158T
  • A159G
  • T163C
  • A180T
  • C190T
  • T207C
  • G208T
  • A210G
  • A212G
  • C232T
  • C238T
  • A255G
Deletions

694, 707
Insertions

ins_701:CT, ins_738:GC

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:M198I
  • VP2:T200A
  • VP2:R249T

VP3

  • VP3:D93N
  • VP3:M100L
  • VP3:T232A
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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