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LOC_000Q9H9.1
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Download FASTA
Download metadata TSV
China/LOC_000Q9H9.1
L. Li,
Y. He,
H. Yang,
J. Zhu,
X. Xu,
J. Dong,
Y. Zhu &
Q. Jin
Institute for Viral Disease Control and Prevention, CDC, The State Key Laboratory of Molecular Virology and Genetic Engneering
Sample details
Earliest release date
2005-08-15
Sampling location
China
Isolate name
shenzhen
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-16 08:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2005-08-15
NCBI update date
2016-07-26
INSDC accession
AY895125.1
Host
Host
Submission details
Submission ID
AY895125.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-16 08:46:33 UTC
Date released
2026-04-16 08:49:01 UTC
Clade
Clade CV-A16
B1c
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
641
Total inserted nucs
1
Total deleted nucs
4
Length
3145 (42.5%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
G
137
A
T
138
A
C
142
T
A
154
G
C
159
T
T
162
C
T
185
C
C
194
T
G
224
A
C
236
T
G
263
A
A
276
G
A
287
G
C
339
T
G
340
A
T
342
A
G
360
A
T
385
C
Show more
Deletions
583, 702-704
Insertions
ins_241:T
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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