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LOC_000Q9FE.1
Download
Download FASTA
Download metadata TSV
Kazakhstan/LOC_000Q9FE.1/2022
T. I. Nurmakhanov,
N. A. Turebekov,
N. B. Tukhanova,
G. Z. Tokmurziyeva,
V. P. Sadovskaya &
A. B. Shevtsov
National center for biotechnology, Kazakhstan, Laboratory of applied genetics
Sample details
Collection date
2022
Earliest release date
2023-10-29
Sampling location
Kazakhstan
Isolate name
74
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-09 07:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-10-29
INSDC accession L segment
OR633378.1
INSDC accession S segment
OR633376.1
Host
Host
hard ticks; hardbacked ticks; scale ticks
Submission details
Submission ID
OR633378.1.L/OR633376.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q9FE.1.embl
Alignment and QC
Total SNPs L segment
110
Length L segment
752 (6.21%)
Total SNPs S segment
81
Length S segment
702 (38.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
A
379
G
A
385
T
T
403
A
A
416
G
T
430
C
T
442
A
T
451
C
T
466
C
C
475
T
C
481
T
T
499
C
C
505
T
T
509
C
G
511
A
A
523
G
G
538
T
G
543
A
T
550
G
Show more
S segment
G
60
A
T
63
C
C
66
T
A
84
G
A
93
G
A
98
T
A
102
G
G
120
A
T
128
A
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
C
201
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
Y
20
F
NP:
F
30
Y
NP:
K
45
R
NP:
V
83
A
NP:
S
105
L
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
I
114
V
RdRp:
R
156
K
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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