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LOC_000Q4P2.1
Download
Download FASTA
Download metadata TSV
Display Name: Greece/LOC_000Q4P2.1/2025-06-24
A. Papa,
S. Pappa &
K. Tsioka
Sample details
Collection date
2025-06-24
Collection date (lower bound)
2025-06-24
Collection date (upper bound)
2025-06-24
Earliest release date
2025-11-17
Collection country
Greece
Isolate name
Larissa-465/Greece/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-08 10:39
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Aristotle University of Thessaloniki, A' Dept. of Microbiology
INSDC
NCBI release date
2025-11-17
INSDC accession L
PX499074.1
INSDC accession M
PX499073.1
INSDC accession S
PX499075.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12078
Total SNPs L
1300
Total inserted nucs L
5
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Frame shifts L
[]
Completeness L
99.71%
Stop codons L
[]
Total stop codons L
0
Alignment and QC metrics M
Length M
5353
Total SNPs M
1049
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Frame shifts M
[]
Completeness M
99.80%
Stop codons M
[]
Total stop codons M
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
249
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Frame shifts S
[]
Completeness S
100.00%
Stop codons S
[]
Total stop codons S
0
Submission details
Submission ID
PX499074.1.L/PX499073.1.M/PX499075.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-08 10:39:11 UTC
Date released
2025-12-08 10:47:24 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000Q4P2.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
A
42
T
L:
G
43
C
L:
T
49
C
L:
A
53
G
L:
C
59
T
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
67
C
L:
A
72
G
L:
A
73
T
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
L:
C
148
T
Show more
M
M:
C
18
T
M:
C
21
T
M:
T
40
C
M:
G
50
A
M:
A
51
G
M:
A
61
T
M:
T
67
C
M:
T
68
C
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
C
85
T
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
Show more
Deletions
M:333-335
Insertions
ins_L:25:T, ins_L:57:AT, ins_L:11928:CG, ins_M:5171:T, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
P
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
T
32
A
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
I
131
M
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC:77
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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