This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q49X.1

Display Name: France/LOC_000Q49X.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
3445

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-08 10:39insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1531
Total SNPs S
141
Total inserted nucs S
8
Total deleted nucs S
15
Total ambiguous nucs S
0
Total unknown nucs S
627
Total frame shifts S
3
Frame shifts S
[{'cdsName': 'NP', 'nucRel': {'begin': 91, 'end': 283}, 'nucAbs': [{'begin': 145, 'end': 334}], 'codon': {'begin': 30, 'end': 93}, 'gapsLeading': {'begin': 30, 'end': 30}, 'gapsTrailing': {'begin': 93, 'end': 93}}, {'cdsName': 'NP', 'nucRel': {'begin': 508, 'end': 697}, 'nucAbs': [{'begin': 556, 'end': 744}], 'codon': {'begin': 167, 'end': 230}, 'gapsLeading': {'begin': 167,...
Completeness S
54.49%
Stop codons S
[{'cdsName': 'NP', 'codon': 134}, {'cdsName': 'NP', 'codon': 155}]
Total stop codons S
2

Submission details

Submission ID
PV976886.1.S
Submitting group
Date submitted
2025-12-08 10:39:11 UTC
Date released
2025-12-08 10:47:24 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C166T
  • S:C187T
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:T220C
  • S:T223C
  • S:C235T
  • S:C241T
  • S:A243C
  • S:C244A
  • S:G245T
  • S:C246G
  • S:A247T
  • S:T250C
  • S:G262A
  • S:G271A
    • Deletions
    S:483-485, S:584-586, S:665, S:745, S:803-807, S:857, S:858
    Insertions
    ins_S:145:C, ins_S:247:CGC, ins_S:334:CC, ins_S:556:A, ins_S:567:G

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:L26D
  • NP:V27T
  • NP:D28F
  • NP:E94K
  • NP:W95R
  • NP:T124A
  • NP:G125N
  • NP:K135*
  • NP:A143D
  • NP:Y156*
  • NP:E161D
  • NP:K237S
  • NP:A239Q
  • NP:E240G
  • NP:T241D
  • NP:E242R
  • NP:G243R
  • NP:G245V
  • NP:I246L
    • Deletions
    NP:144, NP:250, NP:251
    Insertions
    None

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