This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q455.1

Display Name: France/LOC_000Q455.1/2024
M. Gasparine

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
590

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-08 10:39insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession L

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
10913
Total SNPs L
527
Total inserted nucs L
130
Total deleted nucs L
86
Total ambiguous nucs L
0
Total unknown nucs L
2017
Total frame shifts L
32
Frame shifts L
[{'cdsName': 'RdRp', 'nucRel': {'begin': 1687, 'end': 1901}, 'nucAbs': [{'begin': 1762, 'end': 1976}], 'codon': {'begin': 562, 'end': 634}, 'gapsLeading': {'begin': 562, 'end': 562}, 'gapsTrailing': {'begin': 634, 'end': 634}}, {'cdsName': 'RdRp', 'nucRel': {'begin': 1925, 'end': 2074}, 'nucAbs': [{'begin': 1999, 'end': 2146}], 'codon': {'begin': 641, 'end': 690},...
Completeness L
73.11%
Stop codons L
[]
Total stop codons L
0

Submission details

Submission ID
PV976882.1.L
Submitting group
Date submitted
2025-12-08 10:39:11 UTC
Date released
2025-12-08 10:47:24 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A1375G
  • L:G1408A
  • L:T1420C
  • L:C1435T
  • L:C1495T
  • L:T1590C
  • L:C1591T
  • L:A1641G
  • L:T1710C
  • L:T1732C
  • L:T1802G
  • L:T1877C
  • L:A1879G
  • L:C1927T
  • L:G1990A
  • L:C1999T
  • L:G2000T
  • L:C2006T
    • Deletions
    L:1977, L:2069, L:2168, L:2186, L:2201, L:2224, L:2234, L:3176, L:3212-3215, L:4396, L:4822, L:4823, L:5086, L:5099, L:5100, L:5126, L:5127, L:5158, L:5198-5200, L:5237, L:5246, L:5309, L:5310, L:5337, L:5390-5392, L:5417, L:5480, L:5498, L:5499, L:5588, L:5635, L:6047, L:6197, L:6212, L:6506, L:6586, L:6620, L:6670, L:6682, L:6725, L:6959-6962, L:6987, L:6988, L:7037, L:7038, L:7076,...
    Insertions
    ins_L:1762:G, ins_L:1999:T, ins_L:2032:A, ins_L:2116:A, ins_L:2146:TGGA, ins_L:4983:C, ins_L:5008:CT, ins_L:5031:C, ins_L:5069:AT, ins_L:5257:TTG, ins_L:5356:A, ins_L:5439:T, ins_L:5458:AGCT, ins_L:5549:TTACC, ins_L:6249:CACT, ins_L:6304:TGCAG, ins_L:6320:G, ins_L:6345:GCCTAAG, ins_L:6364:T, ins_L:6391:AC, ins_L:6482:CAC, ins_L:6526:C, ins_L:6553:T, ins_L:6714:ATG, ins_L:6771:C,...

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:I505T
  • RdRp:K522R
  • RdRp:L545P
  • RdRp:I1035K
  • RdRp:K1037I
  • RdRp:V1039D
  • RdRp:D1040N
  • RdRp:E1041R
  • RdRp:T1042S
  • RdRp:A1043I
  • RdRp:N1044A
  • RdRp:E1643G
  • RdRp:P1660T
  • RdRp:L1665H
  • RdRp:T1692I
  • RdRp:P1725E
  • RdRp:F1726L
  • RdRp:Y1755T
    • Deletions
    RdRp:698, RdRp:709, RdRp:1034, RdRp:1046, RdRp:1047, RdRp:1637, RdRp:1684, RdRp:1724, RdRp:1727, RdRp:1745, RdRp:1781, RdRp:1838, RdRp:2041, RdRp:2046, RdRp:2144, RdRp:2182, RdRp:2217, RdRp:2295-2297, RdRp:2361, RdRp:2364, RdRp:2365, RdRp:2474, RdRp:2478, RdRp:2531, RdRp:2681, RdRp:2735, RdRp:2891, RdRp:2892, RdRp:2919, RdRp:2934, RdRp:3372, RdRp:3453, RdRp:3900
    Insertions
    ins_RdRp:691:GL, ins_RdRp:1643:T, ins_RdRp:2087:HYKAMP, ins_RdRp:2774:M, ins_RdRp:2838:XXP, ins_RdRp:3539:M, ins_RdRp:3583:XX

    Report an issue with this sequence or metadata

    Create GitHub issue