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LOC_000Q439.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q439.1/2018-09-24
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
CDC, VSPB
Sample details
Collection date
2018-09-24
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201900888
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-09-19
INSDC accession L
MW464955.1
INSDC accession M
MW464956.1
INSDC accession S
MW464957.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW464955.1.L/MW464956.1.M/MW464957.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-12 12:19:40 UTC
Date released
2026-11-12 12:23:31 UTC
Lineage
Segment S Lineage
II
Files
Annotations
LOC_000Q439.1.embl
Alignment and QC
Total SNPs L
2047
Total inserted nucs L
12
Total deleted nucs L
9
Length L
12095 (99.9%)
Total SNPs M
1558
Total inserted nucs M
57
Total deleted nucs M
35
Length M
5338 (99.1%)
Total SNPs S
284
Total inserted nucs S
1
Length S
1630 (97.4%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
A
42
G
G
43
T
C
48
T
A
53
G
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
T
131
A
Show more
M
G
32
C
A
34
T
A
35
C
G
36
C
T
37
G
G
38
A
T
40
C
A
41
T
G
50
T
A
51
G
A
52
T
T
54
C
G
55
A
G
56
T
A
57
C
T
58
A
T
59
A
A
61
G
Show more
S
A
50
G
G
54
A
A
61
G
C
64
T
G
67
A
A
78
C
A
81
G
A
85
G
A
109
G
G
122
A
A
124
T
A
130
C
T
144
A
C
154
T
T
157
C
C
166
T
T
175
C
C
178
T
Show more
Deletions
L
12018-12025, 12041
M
135-143, 726-740, 5195-5201, 5291-5294
Insertions
L
ins_60:C, ins_11931:AT, ins_12108:GTGTGGGGG
M
ins_212:CCAACTATTCTGAATAGTACA, ins_332:GCAACCACTGAGGAAGCAACATCC, ins_394:AAC, ins_471:TTCCGCAAG
S
ins_1581:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
R
GPC:
H
2
L
GPC:
I
3
V
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
S
GPC:
A
8
L
GPC:
I
9
A
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
E
GPC:
L
17
N
GPC:
G
18
D
GPC:
D
40
I
GPC:
N
41
T
GPC:
P
42
S
GPC:
S
43
A
GPC:
S
44
N
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
G
23
S
NP:
F
30
Y
NP:
S
52
G
NP:
D
116
G
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
N
221
D
NP:
I
246
V
NP:
R
270
K
NP:
S
275
K
NP:
I
277
V
NP:
S
301
G
NP:
A
302
G
NP:
A
307
P
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
P
RdRp:
S
205
P
Show more
Deletions
GPC
GPC:19-38, GPC:208-213
Insertions
GPC
ins_GPC:103:PATTEEATSPTTAATVSTQETKTHMIQNPGTTVDSDI
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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