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LOC_000Q439.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_000Q439.1/2023-08-05
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-08-05
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-8/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-19 17:25
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964928.1
INSDC accession M
OR964939.1
INSDC accession S
OR964917.1
Submission details
Submission ID
OR964928.1.L/OR964939.1.M/OR964917.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-19 17:24:57 UTC
Date released
2026-03-19 17:33:04 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000Q439.1.embl
Alignment and QC
Total SNPs L
1629
Total inserted nucs L
47
Length L
12140 (99.9%)
Variant L
False
Total SNPs M
670
Total inserted nucs M
1
Total unknown nucs M
18
Length M
5331 (99%)
Variant M
False
Total SNPs S
208
Total inserted nucs S
1
Total unknown nucs S
8
Length S
1636 (97.3%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
Show more
M
G
55
A
A
57
G
G
76
A
C
85
T
T
86
C
A
101
G
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
G
143
A
A
146
G
G
147
A
G
149
A
T
152
C
Show more
S
T
48
C
A
61
G
C
64
T
G
67
A
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
G
169
A
C
178
A
T
182
C
C
217
T
G
229
A
C
235
T
T
250
A
G
262
A
A
268
C
Show more
Deletions
N/A
Insertions
L
ins_58:T, ins_11931:AT, ins_12055:ACAATTTTC, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAAC
M
ins_5169:G
S
ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
G
GPC:
T
34
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
P
66
L
GPC:
G
69
R
GPC:
L
70
P
GPC:
G
85
K
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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