LOC_000Q3UT.1

J. Ji, H. Zhou, M. Cui, M. Guo, Z. Ma, L. Li, T. Hu & W. Shi

Shandong First Medical University and Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases

Sample details

Earliest release date

2022-12-30

Isolate name

JMN01/CCHFV/CHINA/2021

Data use terms

Changed	User	Data use terms
2026-05-13 13:23	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2022-12-30

INSDC accession L

ON500502.1

INSDC accession M

ON500501.1

INSDC accession S

ON500500.1

Host

hard ticks; hardbacked ticks; scale ticks (Hyalomma asiaticum)

Submission details

Submission ID

ON500502.1.L/ON500501.1.M/ON500500.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-13 13:22:59 UTC

Date released

2026-05-13 13:34:43 UTC

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000Q3UT.1.embl

Alignment and QC

Total SNPs L

1568

Total inserted nucs L

Length L

12123 (99.9%)

Total SNPs M

1027

Total inserted nucs M

Length M

5341 (99.5%)

Total SNPs S

227

Total inserted nucs S

Length S

1717 (99%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

T10C
G23T
G32A
A35G
A42G
G43C
T49C
A53G
C59T
C63T
G71T
G93A
T106C
A109G
G112A
T131A
C136T
T139C

M

G50T
A51G
G56A
A57C
A70G
T71A
A80G
T83C
G84T
C85T
T86C
C92T
C96T
T98C
T100C
T102C
A108T
A112G

S

T48C
G54A
A61G
C64T
G67A
G99A
A118G
C142T
T157C
C166T
C178A
A180T
T182C
G189A
T220C
G229A
C235T
A247G

Deletions

N/A

Insertions

L

ins_11932:TT, ins_12058:A, ins_12108:AGGGTGTGGGGGGAACGATTT

M

ins_5171:C

S

ins_1540:TT, ins_1577:A, ins_1672:GTCATCGCAAGTTCACTACAGCCTCCGTCCCGCCTGCAGCAAGCTTCGCTACCGCCGC

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references