This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3EN.1

Display Name: Netherlands/LOC_000Q3EN.1/2022-09-16
E. Munger, N. Atama, J. van Irsel, R. Blom, L. Krol, T. van Mastrigt, T. J. van den Berg, M. Braks, A. de Vries, A. van der Linden, I. Chestakova, M. Boter, F. D. Chandler, R. Kohl, D. F. Nieuwenhuijse, M. Uiterwijk, R. A. M. Fouchier, H. Sprong, A. Grone, C. J. M. Koenraadt, M. Schrama, C. B. E. M. Reusken, A. Stroo, J. M. A. van den Brand, H. P. van der Jeugd, B. B. Oude Munnink, R. S. Sikkema & M. P. G. Koopmans

Sample details

Collection date
2022-09-16
Collection date (lower bound)
2022-09-16
Collection date (upper bound)
2022-09-16
Earliest release date
2025-06-14
Collection country
Netherlands
Collection subdivision level 1
Noord-Holland, Hippolytushoef
Isolate name
WNV/NL/2022/22B01475

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 14:56insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Erasmus MC Rotterdam, Viroscience

INSDC

NCBI release date
2025-06-14
NCBI update date
2025-06-14
INSDC accession

Host

Host taxon id
Host name scientific
Ardea cinerea

Alignment and QC metrics

Length
479
Total SNPs
107
Total inserted nucs
0
Total deleted nucs
156
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
env:277-278(nt:1795-1800)
Completeness
5.76%
Total stop codons
0

Submission details

Submission ID
PV729999.1
Submitting group
Date submitted
2026-01-28 14:56:35 UTC
Date released
2026-01-28 15:20:34 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1212C
  • C1215G
  • C1219A
  • T1221A
  • A1230C
  • T1233C
  • T1236C
  • G1239T
  • G1244A
  • A1245G
  • A1251C
  • G1254T
  • G1263A
  • C1266A
  • C1272A
  • C1275T
  • A1287G
  • C1293A
    • Deletions
    1677-1794, 1801-1838
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:T157A
  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T
    • Deletions
    env:238-276
    Insertions
    None

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