This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3EN.1

China/LOC_000Q3EN.1/2004
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
2004
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA04032

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047178.1.L/OR047158.1.M/OR047138.1.S
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC

Host

Host

Lineage

Segment S Lineage
IV.2

Files

annotations

Alignment and QC

Total SNPs L
1538
Total inserted nucs L
124
Length L
12232 (100%)
Variant L
False
Total SNPs S
208
Total inserted nucs S
1
Length S
1673 (100%)
Variant S
False
Total SNPs M
1591
Total inserted nucs M
92
Total deleted nucs M
31
Total frame shifts M
1
Frame shifts M
GPC:20-38(nt:150-206)
Length M
5401 (99.5%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • G23T
  • A35G
  • G43C
  • T49C
  • A50G
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • T131A
  • T139C
  • T151C

M

  • T1C
  • T3A
  • C4G
  • A5C
  • A6G
  • A7C
  • G8C
  • A9G
  • A13C
  • T15C
  • T16C
  • G19C
  • A22G
  • A27G
  • G28C
  • T29G
  • A30G
  • A34G

S

  • C38A
  • T48C
  • G51A
  • G54A
  • A61G
  • C97T
  • G99A
  • A118G
  • C142T
  • T157C
  • C166T
  • C178A
  • T182C
  • C187T
  • G190A
  • G196A
  • C217T
  • G229A
Deletions

M

38-40, 207-216, 671-685, 5153-5155
Insertions

L

ins_58:T, ins_11922:TC, ins_12108:TTTCATTTTCACTATTTCCAGTTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATG

M

ins_0:GC, ins_149:CTTGCTGATGAGGCCAGAACGA, ins_362:CCAACCATCACCGTCCAGCCACCGGCAACAGAGAAA, ins_5232:TAACTAACTTAAGGAACCATGACCGGCCAGCT

S

ins_1577:A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1E
  • GPC:I3M
  • GPC:S4L
  • GPC:M6I
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9V
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13I
  • GPC:C15W
  • GPC:G16S
  • GPC:L17G
  • GPC:S43V
  • GPC:P46T
  • GPC:V48T
  • GPC:S49E
  • GPC:T50A

NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:A146T
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:D262N
  • NP:R270K
  • NP:S301G
  • NP:M353L
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:E126D
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223M
  • RdRp:K275R
Deletions

GPC

GPC:39-42, GPC:128-137, GPC:193-197
Insertions

GPC

ins_GPC:18:GLAD, ins_GPC:106:KSSTTTSPTATTPAVPTPGPPA

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