This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3EN.1

China/LOC_000Q3EN.1/1975
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1975
Earliest release date
2023-08-21
Sampling location
China
Isolate name
Ha75001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-09 14:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
OR047169.1.L/OR047149.1.M/OR047129.1.S
Submitting group
Date submitted
2026-04-09 14:51:52 UTC
Date released
2026-04-09 15:02:52 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs M
609
Total inserted nucs M
128
Total deleted nucs M
11
Length M
5483 (100%)
Variant M
False
Total SNPs S
218
Total inserted nucs S
23
Total deleted nucs S
2
Length S
1688 (99.7%)
Variant S
False
Total SNPs L
1608
Total inserted nucs L
60
Length L
12168 (100%)
Variant L
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • G23T
  • A35G
  • G43C
  • T49C
  • A50G
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • A124G
  • T131A
  • C136T

M

  • T1C
  • T3A
  • A5T
  • T68C
  • G76A
  • A80G
  • C85T
  • A88G
  • C92T
  • A107G
  • A112G
  • A117G
  • C119T
  • C126T
  • A128G
  • G136A
  • A146G
  • G149A

S

  • T1C
  • C2A
  • T48C
  • G54A
  • A61G
  • C64T
  • G67A
  • G91A
  • G99A
  • A118G
  • C139T
  • C142T
  • T157C
  • C166T
  • C178A
  • T182C
  • C187A
  • G229A
Deletions

M

5289-5299

S

1611, 1612
Insertions

L

ins_58:T, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTCTGAA

M

ins_0:CTCATCTTGACTGCGTGCCG, ins_5168:G, ins_5366:CTAGGTATTGAACCAGTTTCTGCATTGCTGAATCAATCTCCCAAGGGTAATTCCACAGAAATCCCAGGGGCTTGGAGTAAACAAGACCGCGCCTAGCCCAGCTAGAG

S

ins_0:CCCATCAATGGCAATGGCAAA, ins_1530:T, ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:L70P
  • GPC:G85E

NP

  • NP:R15K
  • NP:D44E
  • NP:T111I
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:A229T
  • NP:I246V
  • NP:D262E
  • NP:R270K
  • NP:S275N
  • NP:Y291L
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:L90I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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