This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q39Y.1

China/LOC_000Q39Y.1/1968
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1968
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA68045

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047173.1.L/OR047153.1.M/OR047133.1.S
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC

Lineage

Segment S Lineage
IV.2

Files

annotations

Alignment and QC

Total SNPs S
226
Total inserted nucs S
57
Total deleted nucs S
2
Length S
1727 (100%)
Variant S
False
Total SNPs L
1603
Total inserted nucs L
312
Length L
12420 (100%)
Variant L
False
Total SNPs M
1579
Total inserted nucs M
79
Total deleted nucs M
34
Total frame shifts M
1
Frame shifts M
GPC:20-38(nt:150-206)
Length M
5406 (99.9%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C2T
  • T3A
  • C4A
  • A6T
  • A7T
  • G8C
  • A11T
  • C13T
  • A14T
  • A15T
  • T16G
  • C17G
  • G23T
  • T33C
  • A35G
  • G43C
  • T49C
  • C63G

M

  • C2T
  • C4A
  • A5T
  • G8A
  • A10G
  • A11T
  • A13T
  • C14G
  • T16A
  • C18A
  • G19T
  • G20T
  • C21T
  • C23A
  • G24C
  • T25A
  • A27T
  • T29A

S

  • T3A
  • A7C
  • G8C
  • C12A
  • C14T
  • G15A
  • G17A
  • C18A
  • C19G
  • G20A
  • C21G
  • A24C
  • C25G
  • C27T
  • C28T
  • A30C
  • T48C
  • G54A
Deletions

M

55-60, 207-216, 672-686, 5153-5155

S

34, 1615
Insertions

L

ins_0:GCTGTTTTGTTAATTATTCACTATTAAAGGTTTTTTCCGTTCCAGAAGAGCTGTCCCTCTTTTGGCTATAATCTAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAAAATTGAAC, ins_58:T, ins_11930:AA, ins_12083:TACTATCCTGCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGCCACCACTGCCCGGCTTGACACTGTAAGTTTTAAATGTAAAATGCTTCCTTACAAGTTGCCTAAAAATGTATTACTATCACGTTTCTGGATCCAAAGAACTACCAAAATGTACGTAATGGCACCCACATGGTAAATTCATT

M

ins_0:TTTTAAAACA, ins_149:CTTGCTGATGAGGCCAGAACGA, ins_314:GAGTCTGGCACCAACCTCCCTACTACCAGA, ins_365:AGACAT, ins_5206:ATGCGCTTCTC

S

ins_0:CTCAGCCGTTAAAGGCTAGGC, ins_1577:A, ins_1672:CTGGCATTTATTGAGTGATTACTATATGCTGGTGT

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M1K
  • GPC:I3M
  • GPC:S4L
  • GPC:M6I
  • GPC:Y7N
  • GPC:A8F
  • GPC:L10F
  • GPC:L12P
  • GPC:Q13I
  • GPC:C15W
  • GPC:G16S
  • GPC:L17G
  • GPC:S43V
  • GPC:P46T
  • GPC:V48T
  • GPC:S49K
  • GPC:T50A
  • GPC:A51T

NP

  • NP:D116E
  • NP:T124A
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:K206I
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:G113D
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
Deletions

GPC

GPC:39-42, GPC:194-198
Insertions

GPC

ins_GPC:18:GLAD, ins_GPC:116:TTPATPTPKPPA

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