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LOC_000Q39Y.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_000Q39Y.1/2017-07-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2017-07-07
Collection date (lower bound)
2017-07-07
Collection date (upper bound)
2017-07-07
Earliest release date
2025-07-27
Collection country
Tajikistan
Isolate name
CCHFV_C20
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-10 15:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-07-27
INSDC accession L
PV953854.1
INSDC accession M
PV953853.1
INSDC accession S
PV953852.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12128
Total SNPs L
1612
Total inserted nucs L
46
Total deleted nucs L
3
Total ambiguous nucs L
10
Total unknown nucs L
1
Total frame shifts L
0
Completeness L
99.72%
Total stop codons L
0
Alignment and QC metrics M
Length M
4490
Total SNPs M
774
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
3
Total unknown nucs M
1
Total frame shifts M
0
Completeness M
82.21%
Total stop codons M
0
Alignment and QC metrics S
Length S
1665
Total SNPs S
216
Total inserted nucs S
8
Total deleted nucs S
0
Total ambiguous nucs S
15
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
90.92%
Total stop codons S
0
Submission details
Submission ID
PV953854.1.L/PV953853.1.M/PV953852.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-10 15:18:07 UTC
Date released
2026-02-10 15:22:07 UTC
Files
Annotations
LOC_000Q39Y.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
G
57
T
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
82
T
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
Show more
M
M:
C
492
T
M:
A
493
G
M:
T
503
G
M:
A
508
G
M:
A
512
C
M:
C
517
T
M:
T
518
C
M:
C
521
G
M:
C
523
A
M:
G
526
A
M:
A
530
G
M:
T
532
C
M:
C
533
T
M:
G
535
A
M:
T
538
G
M:
A
541
G
M:
C
544
T
M:
A
545
T
Show more
S
S:
T
16
A
S:
C
22
T
S:
C
31
G
S:
T
32
C
S:
G
34
A
S:
A
45
G
S:
C
48
T
S:
A
84
G
S:
A
98
T
S:
A
102
G
S:
C
126
T
S:
T
141
C
S:
C
144
T
S:
C
150
T
S:
T
166
C
S:
A
173
G
S:
C
183
T
S:
A
186
G
Show more
Deletions
L:11996, L:12086, L:12087
Insertions
ins_L:66:CC, ins_L:11931:AT, ins_L:12051:TAGTCCAATTCTTTCAAC, ins_L:12108:TYGATTATTTCTAGGGTGGGGGGA, ins_S:0:AAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
S
139
A
GPC:
T
142
P
GPC:
Y
144
H
GPC:
P
145
A
GPC:
S
148
G
GPC:
T
153
S
GPC:
P
155
T
GPC:
K
156
G
GPC:
E
158
G
GPC:
T
160
A
GPC:
P
161
S
GPC:
S
164
T
GPC:
K
165
V
GPC:
S
166
P
GPC:
D
169
A
GPC:
N
170
G
GPC:
L
171
T
GPC:
A
172
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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