This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q39Y.1

Greece/Red_River_Greece_2018/2018-08-01
A. Papa, E. Papadopoulou & S. Pappa

Aristotle University of Thessaloniki, A' Dept. of Microbiology

Sample details

Collection date
2018-08
Earliest release date
2019-01-19
Sampling location
Greece
Isolate name
Red_River_Greece_2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-19
NCBI update date
2019-01-19
INSDC accession

Host

Host

Submission details

Submission ID
MK036410.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:53:57 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
63
Total deleted nucs
3531
Length
331 (35%)
Amino Acid Mutations from founder clade
  • NS3:S334T
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5319T
  • G5328T
  • C5334T
  • G5343A
  • A5346C
  • C5349A
  • A5352G
  • C5357A
  • A5364G
  • T5367C
  • A5369G
  • T5382C
  • T5397C
  • T5403C
  • C5412A
  • C5415T
  • T5430A
  • G5436A
Deletions

5248-5316, 5637-9098
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:P249H
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:S334T
  • NS3:L336M
Deletions
N/A
Insertions
N/A

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