This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q30G.1

Turkey/LOC_000Q30G.1/2018
A. T. Kalaycioglu, R. Durmaz, O. Ari, M. Bakir, A. Engin & T. Dal

Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Sample details

Collection date
2018
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-SIVAS-C36F-2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-15
INSDC accession L
INSDC accession S

Submission details

Submission ID
OQ954472.1.L/OQ954464.1.S
Submitting group
Date submitted
2026-03-11 12:53:17 UTC
Date released
2026-03-11 12:59:17 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
49
Length L
468 (3.87%)
Variant L
False
Total SNPs S
73
Length S
519 (28.7%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • C6715T
  • A6724G
  • A6730G
  • G6733T
  • T6742C
  • T6745C
  • G6748A
  • C6757T
  • T6760A
  • C6766T
  • T6769C
  • A6784T
  • T6800C
  • G6805A
  • A6808T
  • A6811G
  • A6850G
  • T6862C

S segment

  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
  • A186G
  • T195C
  • C201T
  • A213G
  • C228T
  • G231A
  • T234G
  • G246A
  • A252C
  • A255G
  • T258C
  • T267C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E

RdRp

  • RdRp:A2330T
Deletions
N/A
Insertions
N/A

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