This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2UU.1

USA/LOC_000Q2UU.1
R. L. Fay, K. A. Ngo, L. Kuo, G. G. Willsey, L. D. Kramer & A. T. Ciota

Wadsworth Center, Division of Infectious Diseases

Sample details

Earliest release date
2022-02-01
Sampling location
USA
Isolate name
30 A P1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-02 17:16insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-02-01
NCBI update date
2022-02-01
INSDC accession

Submission details

Submission ID
MZ595332.1
Submitting group
Date submitted
2026-03-02 17:16:42 UTC
Date released
2026-03-02 17:28:57 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
33
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:F486L
  • NS4A:V85A
  • NS5:K177R
  • NS5:K531R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1431T
  • T1442C
  • C1465T
  • C2172T
  • C2466T
  • C2490T
  • C2778T
  • G3510A
  • C4107T
  • A4146G
  • C4803T
  • A4854G
  • G5280A
  • C5517T
  • T6067C
  • C6138T
  • T6405C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:F486L

NS5

  • NS5:K531R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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