This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2P4.1

Spain/LOC_000Q2P4.1/2018
A. Negredo & M. P. Sanchez-Seco

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

Sample details

Collection date
2018
Earliest release date
2023-02-07
Sampling location
Spain
Isolate name
CCHFV-Salamanca-2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-02-07
INSDC accession S segment

Host

Host

Submission details

Submission ID
ON227355.1.S
Submitting group
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:49:26 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
73
Length S segment
489 (27.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T141C
  • C150T
  • G153A
  • G155A
  • T159A
  • T166C
  • C171T
  • A186G
  • T195C
  • C201T
  • A213G
  • C228T
  • G231A
  • T234G
  • G246A
  • A252C
  • A255G
  • G276A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:A100T
  • NP:S109N
  • NP:T111A
  • NP:Q179L
Deletions
N/A
Insertions
N/A

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