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LOC_000Q2N6.1
Download
Download FASTA
Download metadata TSV
United_Arab_Emirates/LOC_000Q2N6.1/2019
J. V. Camp,
P. Weidinger,
S. Ramaswamy,
D. O. Kannan,
B. M. Osman,
J. Kolodziejek,
N. Karuvantevida,
A. Abou Tayoun,
T. Loney,
N. Nowotny &
N. Wolf
Medical University of Vienna, Center for Virology
Sample details
Collection date
2019
Earliest release date
2022-02-22
Sampling location
United Arab Emirates (Al Ain)
Isolate name
UAE/CT219M3/2019
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-02-22
INSDC accession L segment
MW548504.1
INSDC accession M segment
MW548499.1
INSDC accession S segment
MW548494.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma dromedarii)
Submission details
Submission ID
MW548504.1.L/MW548499.1.M/MW548494.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-13 11:38:42 UTC
Date released
2026-08-13 11:42:42 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q2N6.1.embl
Alignment and QC
Total SNPs L segment
1691
Total inserted nucs L segment
28
Total deleted nucs L segment
10
Length L segment
12122 (100%)
Total SNPs S segment
202
Total inserted nucs S segment
10
Length S segment
1663 (91.5%)
Total SNPs M segment
1605
Total inserted nucs M segment
24
Total deleted nucs M segment
66
Total frame shifts M segment
1
Frame shifts M segment
GPC:201-232(nt:676-772)
Length M segment
5286 (98.6%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
T
24
A
G
32
T
A
35
G
A
40
T
G
41
A
G
43
C
T
47
C
C
48
T
T
49
C
A
53
G
G
57
T
C
59
T
T
60
C
T
61
C
C
63
G
C
64
T
Show more
M segment
G
32
T
C
33
A
G
34
A
T
35
G
G
36
T
G
37
A
G
38
T
T
42
C
G
43
T
G
45
T
C
47
T
T
49
A
A
50
G
C
51
T
G
53
T
A
54
G
G
56
A
G
57
A
Show more
S segment
T
16
A
C
31
G
G
34
A
C
48
T
A
50
G
T
63
C
C
66
T
A
83
G
A
84
G
A
93
G
A
98
T
G
118
A
T
119
C
G
120
A
A
132
T
C
150
T
T
165
C
G
168
A
Show more
Deletions
L segment
12029-12032, 12066-12071
M segment
317-328, 480-512, 773-777, 5209-5224
Insertions
L segment
ins_11927:GC, ins_12108:TTACAAGGGTGTGGGGGGAACGATTT
M segment
ins_637:GTC, ins_675:A, ins_714:CCTACAGGAGAAGGCCCCA, ins_5181:T
S segment
ins_0:AAACACGT, ins_1579:CA
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
L
2
P
GPC:
F
3
C
GPC:
H
4
Y
GPC:
F
5
A
GPC:
E
6
T
GPC:
H
7
F
GPC:
M
8
V
GPC:
L
9
S
GPC:
I
11
G
GPC:
N
12
F
GPC:
F
13
L
GPC:
V
14
I
GPC:
F
15
L
GPC:
I
18
Q
GPC:
L
19
P
GPC:
D
27
A
GPC:
R
30
K
GPC:
T
31
A
Show more
NP
NP:
K
4
R
NP:
K
15
R
NP:
Y
20
F
NP:
V
27
T
NP:
D
44
E
NP:
K
45
R
NP:
V
83
A
NP:
N
125
S
NP:
A
154
S
NP:
D
186
E
NP:
D
199
E
NP:
A
271
T
NP:
D
274
E
NP:
A
307
P
NP:
N
442
S
RdRp
RdRp:
D
8
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
T
163
V
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
177
T
RdRp:
S
201
G
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
L
216
I
RdRp:
K
219
R
Show more
Deletions
GPC
GPC:21-25, GPC:87-96, GPC:233, GPC:234
Insertions
GPC
ins_GPC:240:GPTPPS
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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