This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1M9.1

Display Name: China/LOC_000Q1M9.1/2019
W. Shi, H. Zhou & Y. Wang

Sample details

Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2025-10-20
Collection country
China
Isolate name
CCHFV/KELML04/2019/China/Xinjiang

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-03 17:55insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

INSDC

NCBI release date
2025-10-20
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
12133
Total SNPs L
1538
Total inserted nucs L
36
Total deleted nucs L
2
Total ambiguous nucs L
9
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.85%
Total stop codons L
0

Alignment and QC metrics S

Length S
1656
Total SNPs S
209
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.98%
Total stop codons S
0

Alignment and QC metrics M

Length M
5462
Total SNPs M
1537
Total inserted nucs M
153
Total deleted nucs M
32
Total ambiguous nucs M
1
Total unknown nucs M
0
Total frame shifts M
2
Frame shifts M
GPC:20-38(nt:150-206),GPC:86-115(nt:347-437)
Completeness M
99.52%
Total stop codons M
0

Submission details

Submission ID
PV023439.1.L/PV023440.1.M/PV023441.1.S
Submitting group
Date submitted
2025-12-03 17:55:51 UTC
Date released
2025-12-03 18:02:44 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10C
  • L:G23T
  • L:G32A
  • L:A35G
  • L:A42G
  • L:G43C
  • L:T49C
  • L:C59T
  • L:G71C
  • L:G93A
  • L:A109G
  • L:G112A
  • L:A113C
  • L:G130A
  • L:T131A
  • L:T139C
  • L:C148T
  • L:T151C

    • M

  • M:G50T
  • M:A51G
  • M:A52T
  • M:G56T
  • M:A57G
  • M:T58G
  • M:T59G
  • M:G62A
  • M:T68C
  • M:A70C
  • M:C74A
  • M:A80G
  • M:C81T
  • M:C82T
  • M:T83G
  • M:G84T
  • M:C85T
  • M:T86C

    • S

  • S:C38A
  • S:T48C
  • S:G51A
  • S:G54A
  • S:A61G
  • S:G67A
  • S:G99A
  • S:A118G
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:C208A
  • S:C217T
  • S:G229A
  • S:C235T
    • Deletions
    L:67, L:68, M:207-216, M:343-346, M:671-685, M:5153-5155
    Insertions
    ins_L:11928:TG, ins_L:12097:CCA, ins_L:12108:TTCACTATTTCCAGGGTGTGGGGGGAACGAT, ins_M:149:CTTGCTGATGAGGCCAGAACGA, ins_M:437:GACCGCCACCACTCCGGCCGTCCCCACACCAGGGCTACCA, ins_M:5206:ATGTACTTCTC, ins_M:5246:GCCAGCTCAGTGA, ins_M:5289:ACGGTATCCTCCCTTGGGGCCTCCATCCTTGCCATTGATAATTGGTTATAATATTAGAACAGCCGAC, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1E
  • GPC:I3M
  • GPC:S4L
  • GPC:M6I
  • GPC:Y7N
  • GPC:A8F
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13I
  • GPC:L14I
  • GPC:C15W
  • GPC:G16S
  • GPC:L17G
  • GPC:S43V
  • GPC:P46T
  • GPC:P47L
  • GPC:V48T
  • GPC:S49E

    • NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:A146T
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:D262N
  • NP:R270K
  • NP:S301G
  • NP:M353L
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:I13L
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:T140A
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205T
  • RdRp:N206Y
  • RdRp:I223M
  • RdRp:I267T
  • RdRp:K275R
    • Deletions
    GPC:39-42, GPC:85, GPC:193-197
    Insertions
    ins_GPC:18:GLAD, ins_GPC:116:TTPAVPTPGLPA

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