This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1M9.1

India/LOC_000Q1M9.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3460

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession S segment

Host

Host

Submission details

Submission ID
MW298552.1.S
Submitting group
Date submitted
2026-07-10 15:20:24 UTC
Date released
2026-07-10 15:24:23 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
223
Total inserted nucs S segment
1
Length S segment
1635 (90.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T63C
  • C66T
  • A84G
  • A93G
  • A98T
  • A102G
  • T141C
  • C150T
  • G153A
  • T156C
  • A173G
  • G174A
  • G180A
  • A186G
  • C192T
  • C201T
Deletions
N/A
Insertions

S segment

ins_1513:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:Y20F
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:R428K
Deletions
N/A
Insertions
N/A

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