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LOC_000Q1M9.1
Download
Download FASTA
Download metadata TSV
Display Name: Armenia/LOC_000Q1M9.1/2023
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Sample details
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
423-ARM-TI-2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-08 10:39
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
INSDC
NCBI release date
2025-03-02
INSDC accession L
PQ878925.1
INSDC accession M
PQ878916.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
437
Total SNPs L
42
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Frame shifts L
[]
Completeness L
3.61%
Stop codons L
[]
Total stop codons L
0
Alignment and QC metrics M
Length M
435
Total SNPs M
81
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Frame shifts M
[]
Completeness M
8.11%
Stop codons M
[]
Total stop codons M
0
Submission details
Submission ID
PQ878925.1.L/PQ878916.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-08 10:39:11 UTC
Date released
2025-12-08 10:47:24 UTC
Files
Annotations
LOC_000Q1M9.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
124
T
L:
T
131
A
L:
G
142
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
229
C
L:
A
240
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
A
310
G
L:
C
313
T
Show more
M
M:
C
4644
T
M:
C
4652
T
M:
T
4661
G
M:
A
4664
G
M:
C
4671
T
M:
T
4676
C
M:
A
4694
T
M:
C
4697
T
M:
A
4701
C
M:
A
4713
G
M:
A
4730
G
M:
C
4734
A
M:
A
4736
G
M:
T
4742
A
M:
T
4743
C
M:
G
4745
A
M:
C
4748
T
M:
A
4751
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
1527
Y
GPC:
E
1534
D
GPC:
K
1537
Q
GPC:
N
1541
D
GPC:
Q
1548
K
GPC:
S
1564
D
GPC:
S
1571
G
GPC:
M
1587
V
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
V
1595
F
GPC:
F
1596
S
GPC:
M
1597
I
GPC:
F
1600
L
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1652
R
GPC:
K
1661
R
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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