This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000Q1M9.1
Download
Download FASTA
Download metadata TSV
India/LOC_000Q1M9.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-T-2032
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-08-07
INSDC accession M segment
MW298541.1
INSDC accession S segment
MW298547.1
Submission details
Submission ID
MW298541.1.M/MW298547.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-24 13:47:35 UTC
Date released
2026-07-24 13:51:35 UTC
Clade & Lineage
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q1M9.1.embl
Alignment and QC
Total SNPs M segment
345
Total inserted nucs M segment
1
Length M segment
5337 (97.8%)
Total SNPs S segment
220
Length S segment
1634 (90.5%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
M segment
G
51
A
A
53
G
G
65
A
G
72
A
T
78
C
A
97
G
A
127
G
C
133
T
G
145
A
T
148
C
A
149
C
C
151
T
C
155
T
G
166
A
A
171
G
T
181
A
C
185
G
A
204
G
Show more
S segment
T
16
A
T
23
C
C
31
G
T
32
C
G
34
A
A
38
G
A
45
G
C
48
T
G
75
A
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
G
153
A
T
166
C
A
173
G
Show more
Deletions
N/A
Insertions
M segment
ins_5166:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
N
21
H
GPC:
P
23
S
GPC:
E
28
G
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
P
47
L
GPC:
V
54
F
GPC:
S
64
T
GPC:
P
66
L
GPC:
G
69
R
GPC:
V
76
P
GPC:
S
80
P
GPC:
I
82
A
GPC:
P
96
L
GPC:
V
102
I
GPC:
V
103
I
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
Report an issue with this sequence or metadata
Create GitHub issue