This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1M9.1

Uganda/LOC_000Q1M9.1/2013-08-18
S. Balinandi, S. Whitmer, S. Mulei, L. Nyakarahuka, A. Tumusiime, J. Kyondo, L. Mugisha, M. Almberg, J. Lutwama, T. Shoemaker & J. D. Klena

CDC, VSPB

Sample details

Collection date
2013-08-18
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201301846

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-09-19
INSDC accession S segment

Host

Host

Submission details

Submission ID
MW464944.1.S
Submitting group
Date submitted
2026-07-06 18:29:40 UTC
Date released
2026-07-06 18:34:27 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
171
Total deleted nucs S segment
43
Total ambiguous nucs S segment
2
Total unknown nucs S segment
3
Length S segment
1097 (62.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A450T
  • A468T
  • C471T
  • A474G
  • G477A
  • T480C
  • A490C
  • C498T
  • G504A
  • C507T
  • T513C
  • C519T
  • A528G
  • G543A
  • C547T
  • T561C
  • C562A
  • G564A
Deletions

S segment

1523-1565
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K151Q
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275G
  • NP:I277V
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:R428K
Deletions
N/A
Insertions
N/A

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