This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1M9.1

Iraq/LOC_000Q1M9.1
J. Chamberlain, N. Cook, G. Lloyd, V. Mioulet, H. Tolley & R. Hewson

Centre for Emergency Preparedness and Response, Health Protection Agency, Novel & Dangerous Pathogens

Sample details

Earliest release date
2005-11-23
Sampling location
Iraq
Isolate name
Baghdad-12

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-11-23
INSDC accession L

Submission details

Submission ID
AY947890.1.L
Submitting group
Date submitted
2026-11-06 16:58:19 UTC
Date released
2026-11-06 16:59:20 UTC

Files

Annotations

Alignment and QC

Total SNPs L
1606
Total inserted nucs L
60
Total deleted nucs L
6
Length L
12162 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • G23T
  • A35G
  • G43C
  • T49C
  • A53G
  • T60C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71C
  • A74G
  • G88A
  • G93A
  • A109G
  • T115G
Deletions

L

10757-10762
Insertions

L

ins_58:T, ins_11928:TG, ins_12086:CATTCTGCTATTCTAC, ins_12096:GTTCATGTCAGTTTCATTACTTCCAGGGTGTGGGGGGAACG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:I13M
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67M
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
Deletions

RdRp

RdRp:3565, RdRp:3566
Insertions
N/A

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