This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1M9.1

Mauritania/LOC_000Q1M9.1/1984
V. M. Deyde, M. L. Khristova, P. E. Rollin, T. G. Ksiazek & S. T. Nichol

Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch

Sample details

Collection date
1984
Earliest release date
2006-08-16
Sampling location
Mauritania
Isolate name
ArD39554

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2006-08-16
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
DQ211615.1.L/DQ211628.1.M/DQ211641.1.S
Submitting group
Date submitted
2026-10-13 10:58:14 UTC
Date released
2026-10-13 11:00:00 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
233
Total inserted nucs L segment
52
Length L segment
12160 (100%)
Total SNPs S segment
23
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)
Total SNPs M segment
1517
Total inserted nucs M segment
111
Total deleted nucs M segment
42
Total frame shifts M segment
1
Frame shifts M segment
GPC:117-130(nt:437-478)
Length M segment
5431 (98.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T65C
  • T70C
  • G93A
  • A220G
  • T254A
  • A298G
  • C313T
  • T340C
  • T550G
  • G553A
  • C568T
  • G619A
  • C630T
  • A711G
  • G766A
  • T781C
  • C829T
  • C904T

M segment

  • G34A
  • T36C
  • A47G
  • A48T
  • T50C
  • G51T
  • G52A
  • A53G
  • T55G
  • C59T
  • A60G
  • C62T
  • T63C
  • T64A
  • A66C
  • T67A
  • T68G
  • G69T

S segment

  • T16A
  • A98T
  • C123T
  • A311G
  • G330A
  • C696T
  • G765A
  • C807T
  • G848A
  • T912C
  • A945C
  • C1035T
  • G1088C
  • G1428A
  • C1515T
  • C1574T
  • C1596T
  • C1611T
Deletions

M segment

203-214, 296-298, 338-361, 5255-5257
Insertions

L segment

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA

M segment

ins_0:TCTC, ins_142:GCTTCCAATACAACTATCAGCCCT, ins_436:CCGACCAGCGAAG, ins_478:CCCATCCAAGCCCCAGG, ins_581:TTC, ins_5173:AGCAAACCCCTTCCC, ins_5313:CCTCCACACTGCAGCGTATGTGACACTGTTTCCAT

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:M1K
  • GPC:S4L
  • GPC:M6F
  • GPC:Y7C
  • GPC:A8I
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:L12H
  • GPC:L14Q
  • GPC:C15W
  • GPC:G16N
  • GPC:L17T
  • GPC:K19A
  • GPC:T20S
  • GPC:P56T
  • GPC:D57I
  • GPC:P58S

NP

  • NP:Y20F
  • NP:K91R
  • NP:R270K
  • NP:S350T

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:S185F
  • RdRp:D212G
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:F1000L
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:H1161N
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:I1566V
  • RdRp:M1647L
  • RdRp:P1660T
Deletions

GPC

GPC:22-54
Insertions

GPC

ins_GPC:110:EPPAATPASATAQSPEPASAAQPSPTIPKPTTPDPTSE, ins_GPC:167:T

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