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LOC_000Q1DS.1
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Download FASTA
Download metadata TSV
Display Name: Mongolia/LOC_000Q1DS.1/2022
J. W. Koehler &
J. Richardson
Sample details
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-08-13
Collection country
Mongolia
Collection subdivision level 1
Dornogovi
Isolate name
DoG22-103
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Florida, Environmental and Global Health
INSDC
NCBI release date
2025-08-13
INSDC accession L
PV955430.1
INSDC accession M
PV955429.1
INSDC accession S
PV955428.1
Host
Host taxon id
266040
Host name scientific
Hyalomma asiaticum
Alignment and QC metrics L
Length L
12147
Total SNPs L
1587
Total inserted nucs L
44
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.96%
Alignment and QC metrics M
Length M
5321
Total SNPs M
1021
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.14%
Alignment and QC metrics S
Length S
1657
Total SNPs S
226
Total inserted nucs S
1
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.16%
Submission details
Submission ID
PV955430.1.L/PV955429.1.M/PV955428.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000Q1DS.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
G
32
A
L:
A
35
G
L:
G
41
A
L:
A
42
G
L:
G
43
T
L:
C
46
T
L:
T
49
C
L:
C
59
T
L:
T
65
C
L:
T
70
C
L:
G
71
C
L:
G
93
A
L:
C
95
A
L:
A
109
G
L:
G
112
A
L:
T
131
A
Show more
M
M:
G
50
T
M:
A
51
G
M:
G
56
A
M:
A
57
C
M:
A
61
G
M:
C
66
T
M:
A
69
G
M:
A
70
G
M:
T
71
A
M:
G
73
A
M:
C
82
T
M:
T
83
C
M:
C
85
T
M:
T
86
C
M:
T
91
A
M:
C
92
T
M:
C
96
T
M:
T
98
C
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
G
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
C
151
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
262
A
Show more
Deletions
S:1533, S:1534
Insertions
ins_L:66:CCT, ins_L:11932:TT, ins_L:12092:CCATTTGTTTCAGTTTCATTATTTCCAGGGTGTGGGGGG, ins_M:5170:G, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
V
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
W
GPC:
G
16
D
GPC:
E
19
G
GPC:
H
21
L
GPC:
G
22
V
GPC:
H
24
S
GPC:
R
28
Q
GPC:
K
31
E
GPC:
D
33
G
GPC:
T
34
I
GPC:
T
36
A
GPC:
G
39
E
Show more
NP
NP:
N
8
S
NP:
R
15
K
NP:
F
73
L
NP:
T
102
I
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
L
NP:
D
199
E
NP:
V
205
T
NP:
I
246
V
NP:
K
252
N
NP:
G
259
R
NP:
R
270
K
NP:
S
275
N
NP:
A
285
T
NP:
S
301
G
NP:
K
428
M
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
S
19
T
RdRp:
I
45
V
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
Q
74
H
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
K
91
R
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
C
Show more
Deletions
None
Insertions
None
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