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LOC_000Q182.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_000Q182.1/2017-07-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2017-07-07
Collection date (lower bound)
2017-07-07
Collection date (upper bound)
2017-07-07
Earliest release date
2025-07-27
Collection country
Tajikistan
Isolate name
CCHFV_B.D.35
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-07-27
INSDC accession L
PV953848.1
INSDC accession M
PV953847.1
INSDC accession S
PV953846.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12122
Total SNPs L
1616
Total inserted nucs L
40
Total deleted nucs L
3
Total ambiguous nucs L
12
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.71%
Alignment and QC metrics M
Length M
4930
Total SNPs M
930
Total inserted nucs M
0
Total deleted nucs M
1
Total ambiguous nucs M
13
Total unknown nucs M
1
Total frame shifts M
0
Completeness M
91.63%
Alignment and QC metrics S
Length S
1673
Total SNPs S
205
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
13
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.22%
Submission details
Submission ID
PV953848.1.L/PV953847.1.M/PV953846.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000Q182.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
82
T
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
L:
T
151
C
Show more
M
M:
G
60
A
M:
A
61
G
M:
A
69
G
M:
T
71
A
M:
G
76
T
M:
A
80
G
M:
T
86
C
M:
C
96
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
104
G
M:
T
105
C
M:
A
108
G
M:
A
112
G
M:
A
116
T
M:
C
119
T
M:
C
125
T
Show more
S
S:
C
38
T
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
262
A
S:
A
268
C
Show more
Deletions
L:11996, L:12086, L:12087, M:89
Insertions
ins_L:66:CC, ins_L:11931:AT, ins_L:12051:TAGTCCAATTCTTTCAAC, ins_L:12108:TYGATTATTTCTAGGGTG, ins_S:1584:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
L
12
P
GPC:
L
14
P
GPC:
C
15
W
GPC:
G
18
E
GPC:
E
19
G
GPC:
G
22
V
GPC:
S
23
L
GPC:
H
24
L
GPC:
E
26
G
GPC:
R
28
K
GPC:
K
31
R
GPC:
D
33
G
GPC:
T
34
I
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
Show more
Deletions
None
Insertions
None
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