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LOC_000Q174.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_000Q174.1/2017-06-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2017-06-23
Collection date (lower bound)
2017-06-23
Collection date (upper bound)
2017-06-23
Earliest release date
2025-07-27
Collection country
Tajikistan
Isolate name
CCHFV_T.Ch.27
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:18
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-07-27
INSDC accession L
PV953845.1
INSDC accession M
PV953844.1
INSDC accession S
PV953843.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12125
Total SNPs L
1597
Total inserted nucs L
41
Total deleted nucs L
1
Total ambiguous nucs L
28
Total unknown nucs L
2
Total frame shifts L
0
Completeness L
99.56%
Alignment and QC metrics M
Length M
4705
Total SNPs M
775
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
6
Total unknown nucs M
259
Total frame shifts M
0
Completeness M
82.72%
Alignment and QC metrics S
Length S
1249
Total SNPs S
173
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
6
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
74.28%
Submission details
Submission ID
PV953845.1.L/PV953844.1.M/PV953843.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000Q174.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
A
53
G
L:
C
59
T
L:
T
62
C
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
C
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
Show more
M
M:
T
542
G
M:
G
551
C
M:
T
554
C
M:
C
555
A
M:
T
557
A
M:
G
558
A
M:
G
559
A
M:
T
566
A
M:
A
569
G
M:
A
570
G
M:
T
573
C
M:
A
578
G
M:
C
581
A
M:
T
582
G
M:
G
584
A
M:
G
585
A
M:
G
586
A
M:
A
587
T
Show more
S
S:
A
425
G
S:
G
428
A
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
457
G
S:
A
460
G
S:
C
472
T
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
A
520
G
Show more
Deletions
L:11996
Insertions
ins_L:67:CT, ins_L:11931:AT, ins_L:12108:TACCATTCATTTCAGTTTGATTATTTCTAGGGTGGGG, ins_M:5171:C, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
P
155
T
GPC:
G
156
K
GPC:
D
158
E
GPC:
T
160
A
GPC:
S
161
P
GPC:
S
164
A
GPC:
G
165
N
GPC:
T
166
P
GPC:
G
167
A
GPC:
E
169
A
GPC:
S
171
T
GPC:
A
172
E
GPC:
T
173
N
GPC:
P
176
Q
GPC:
H
177
R
GPC:
V
179
A
GPC:
S
180
V
GPC:
N
181
S
Show more
NP
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
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