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LOC_000Q166.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_000Q166.1/2018-08-18
S. Balinandi,
S. Whitmer,
S. Mulei,
L. Nyakarahuka,
A. Tumusiime,
J. Kyondo,
L. Mugisha,
M. Almberg,
J. Lutwama,
T. Shoemaker &
J. D. Klena
CDC, VSPB
Sample details
Collection date
2018-08-18
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201706463
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 12:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-09-19
INSDC accession L segment
MW464952.1
INSDC accession M segment
MW464953.1
INSDC accession S segment
MW464954.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW464952.1.L/MW464953.1.M/MW464954.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 12:20:23 UTC
Date released
2026-06-10 12:24:43 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q166.1.embl
Alignment and QC
Total SNPs L segment
2030
Total inserted nucs L segment
13
Total deleted nucs L segment
9
Length L segment
12097 (99.9%)
Total SNPs M segment
1311
Total inserted nucs M segment
28
Total deleted nucs M segment
21
Length M segment
5359 (99.1%)
Total SNPs S segment
281
Length S segment
1641 (90.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
C
17
G
G
23
T
A
35
G
A
42
G
G
43
T
C
48
T
A
53
G
G
57
C
C
59
T
C
63
G
T
65
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
T
115
C
T
118
C
Show more
M segment
C
17
T
C
18
T
C
21
G
G
24
A
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
G
37
A
A
39
T
A
41
T
T
42
C
G
43
A
T
44
A
G
45
C
G
46
T
C
47
T
Show more
S segment
T
16
A
C
31
G
A
45
G
C
48
T
A
62
C
A
65
G
A
69
G
A
83
G
A
84
G
A
98
T
A
102
G
G
106
A
A
108
C
A
114
T
G
120
A
T
128
A
C
138
T
T
141
C
Show more
Deletions
L segment
12018-12025, 12041
M segment
5196-5198, 5247-5264
Insertions
L segment
ins_60:C, ins_11931:AT, ins_12108:GTGTGGGGGG
M segment
ins_75:GT, ins_5335:TGCCTGTTACCACCTTGGCCTAATCT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
F
3
S
GPC:
F
5
Y
GPC:
E
6
K
GPC:
H
7
P
GPC:
L
10
W
GPC:
I
11
V
GPC:
N
12
Y
GPC:
V
14
A
GPC:
F
15
L
GPC:
I
18
L
GPC:
G
22
D
GPC:
G
23
V
GPC:
L
25
T
GPC:
A
26
T
GPC:
D
27
N
GPC:
E
28
G
GPC:
A
29
I
GPC:
R
30
S
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
S
67
E
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
201
G
RdRp:
A
202
S
RdRp:
S
205
P
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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