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LOC_000Q12E.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q12E.1/2009
D.-L. He,
S.-J. Zhuang,
Q. Yan,
L.-F. Xu,
L.-S. Yang,
T. Cheng &
N.-S. Xia
National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University
Sample details
Collection date
2009
Earliest release date
2012-08-20
Sampling location
China
Isolate name
4430-A2
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2012-08-20
NCBI update date
2012-08-20
INSDC accession
JX127274.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
JX127274.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-09 16:34:11 UTC
Date released
2026-09-09 16:37:44 UTC
Clade
Clade CV-A16
B1b
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
586
Length
2586 (34.9%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
A
768
C
A
774
G
G
780
C
T
783
G
C
786
A
C
789
T
A
792
G
T
795
C
G
798
A
A
804
C
A
810
G
A
813
G
A
816
T
T
819
G
T
822
C
C
828
T
C
834
A
C
837
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
E
145
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
V
217
I
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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