This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q12E.1

Display Name: China/LOC_000Q12E.1/2023
W. Shi, H. Zhou & Y. Wang

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-10-20
Collection country
China
Isolate name
CCHFV/XHYYL_8/2023/China/Xinjiang

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

INSDC

NCBI release date
2025-10-20
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
12137
Total SNPs L
1627
Total inserted nucs L
45
Total deleted nucs L
0
Total ambiguous nucs L
1
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.86%

Alignment and QC metrics M

Length M
5065
Total SNPs M
1379
Total inserted nucs M
91
Total deleted nucs M
18
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
93.03%

Alignment and QC metrics S

Length S
1646
Total SNPs S
217
Total inserted nucs S
2
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.44%

Submission details

Submission ID
PV023454.1.L/PV023455.1.M/PV023456.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G23T
  • L:A35G
  • L:C37T
  • L:G43C
  • L:T49C
  • L:A50G
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:A74G
  • L:G88A
  • L:G93A
  • L:G98A
  • L:A109G
  • L:A124G

    • M

  • M:T360A
  • M:C361G
  • M:G362A
  • M:G363C
  • M:G365T
  • M:A371C
  • M:C373A
  • M:G375A
  • M:C378T
  • M:T379C
  • M:C381A
  • M:C382G
  • M:T383C
  • M:G384A
  • M:T385C
  • M:T386C
  • M:C392A
  • M:G393A

    • S

  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T144A
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187A
  • S:T199C
  • S:G229A
    • Deletions
    M:656-670, M:5153-5155, S:1611, S:1612
    Insertions
    ins_L:58:T, ins_L:11925:GT, ins_L:12054:TACAGTTCT, ins_L:12083:GCTATTT, ins_L:12108:TTCATTATTTCCAGGGTGTGGGGGGA, ins_M:5206:ATGCGCTTCTC, ins_M:5263:CCGCTTTACCAAATGTATTCAGCATGCTCTCTTGAA, ins_M:5292:CCTTGTCAATAATTTATGGTTATAATATTAGAGCAGTTAACTGC, ins_S:1530:T, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:S90R
  • GPC:E91H
  • GPC:P94Q
  • GPC:E95K
  • GPC:L96S
  • GPC:P97S
  • GPC:V98T
  • GPC:G101S
  • GPC:T102L
  • GPC:D103V
  • GPC:L105T
  • GPC:S106T
  • GPC:A107P
  • GPC:G108A
  • GPC:D109T
  • GPC:V110P
  • GPC:D111T
  • GPC:S113K

    • NP

  • NP:R15K
  • NP:F30Y
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:D8N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
    • Deletions
    GPC:194-198
    Insertions
    None

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