This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q10J.1

Display Name: China/LOC_000Q10J.1/2021
W. Shi, H. Zhou & Y. Wang

Sample details

Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Earliest release date
2025-10-20
Collection country
China
Isolate name
CCHFV/XMLLC14/2021/China/Xinjiang

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Shandong First Medical University & Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong

INSDC

NCBI release date
2025-10-20
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
12012
Total SNPs L
1524
Total inserted nucs L
2
Total deleted nucs L
2
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.21%

Alignment and QC metrics M

Length M
5345
Total SNPs M
620
Total inserted nucs M
1
Total deleted nucs M
12
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.81%

Alignment and QC metrics S

Length S
1643
Total SNPs S
217
Total inserted nucs S
4
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.03%

Submission details

Submission ID
PV023448.1.L/PV023449.1.M/PV023450.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G23T
  • L:G32A
  • L:A35G
  • L:A42G
  • L:G43C
  • L:T49C
  • L:T55G
  • L:C59T
  • L:T62C
  • L:G71T
  • L:A92G
  • L:G93A
  • L:T106C
  • L:A109G
  • L:G112A
  • L:T114C
  • L:G119A
  • L:T121A

    • M

  • M:A57G
  • M:T71C
  • M:G76A
  • M:C77T
  • M:A80G
  • M:G84A
  • M:C85T
  • M:A88G
  • M:T98C
  • M:A107G
  • M:A112G
  • M:A117G
  • M:C119T
  • M:A128G
  • M:G136A
  • M:A146G
  • M:A148G
  • M:G149A

    • S

  • S:C38T
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:C97T
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:A180T
  • S:T182C
  • S:G189A
  • S:T220C
  • S:G229A
    • Deletions
    L:64, L:65, M:5289-5300
    Insertions
    ins_L:11932:TT, ins_M:5169:G, ins_S:1536:CTT, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:E19G
  • GPC:E26G
  • GPC:R28E
  • GPC:T34A
  • GPC:M35V
  • GPC:P38S
  • GPC:G39S
  • GPC:N41S
  • GPC:P42Q
  • GPC:S49R
  • GPC:A51T
  • GPC:L52Q
  • GPC:S53P
  • GPC:I54V
  • GPC:L56P

    • NP

  • NP:R15K
  • NP:N42I
  • NP:R45K
  • NP:D116E
  • NP:T124A
  • NP:G125D
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6D
  • RdRp:I13T
  • RdRp:G15R
  • RdRp:S19T
  • RdRp:I45V
  • RdRp:N52D
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:K91E
  • RdRp:R92K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
    • Deletions
    None
    Insertions
    None

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