This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q0KE.1

Display Name: Turkey/LOC_000Q0KE.1
E. Dincer, M. O. Timurkan, B. Oguz, E. Ozan, N. Coskun, S. Kiziltepe, P. F. P. Dincer, A. Sahan, D. Yalcinkaya, O. F. Gokcecik, M. B. Nayir, S. H. Bayendur, B. P. Bourke, Y. M. Linton & K. Ergunay

Sample details

Collection date (upper bound)
2025-10-24
Earliest release date
2025-10-24
Collection country
Turkey
Isolate name
Samsun114

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:18insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Smithsonian Institution, Department of Entomology

INSDC

NCBI release date
2025-10-24
INSDC accession L

Host

Host taxon id
Host name scientific
Dermacentor marginatus

Alignment and QC metrics L

Length L
427
Total SNPs L
46
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.53%

Submission details

Submission ID
PV536533.1.L
Submitting group
Date submitted
2025-10-27 14:18:35 UTC
Date released
2025-10-27 14:25:03 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G6748A
  • L:C6757T
  • L:T6760A
  • L:G6762C
  • L:C6766T
  • L:T6769C
  • L:G6771T
  • L:A6784T
  • L:T6800C
  • L:G6805A
  • L:A6808T
  • L:A6811G
  • L:A6850G
  • L:T6862C
  • L:G6865A
  • L:C6871T
  • L:G6880A
  • L:A6895G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:R2229T
  • RdRp:R2232I
  • RdRp:C2328Y
  • RdRp:A2330T
    • Deletions
    None
    Insertions
    None

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