This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZUZ.1

Display Name: Senegal/LOC_000PZUZ.1/2022-08
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Sample details

Collection date
2022-08
Collection date (lower bound)
2022-08-01
Collection date (upper bound)
2022-08-31
Earliest release date
2025-01-18
Collection country
Senegal
Isolate name
sh402429

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-26 08:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

NCBI release date
2025-01-18
INSDC accession M

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics M

Length M
5363
Total SNPs M
179
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.94%
Total stop codons M
0

Submission details

Submission ID
PP894722.1.M
Submitting group
Date submitted
2025-11-26 08:34:45 UTC
Date released
2025-11-26 08:42:19 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T3A
  • M:C4A
  • M:A6G
  • M:G124A
  • M:T140C
  • M:A214G
  • M:C217T
  • M:G220T
  • M:T259C
  • M:C320T
  • M:C334T
  • M:A339G
  • M:G345A
  • M:T360C
  • M:A377G
  • M:T385C
  • M:C404T
  • M:T406C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:C11Y
  • GPC:N41S
  • GPC:P42L
  • GPC:S43I
  • GPC:L56P
  • GPC:P81L
  • GPC:T83A
  • GPC:G85R
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
  • GPC:P123L
  • GPC:N131S
  • GPC:G167D
  • GPC:K168R
  • GPC:S171P
    • Deletions
    None
    Insertions
    None

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