This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZNB.1

South_Africa/LOC_000PZNB.1
F. J. Burt & R. Swanepoel

National Institute for Communicable Diseases, Special Pathogens Unit

Sample details

Earliest release date
2005-06-01
Sampling location
South Africa
Isolate name
spu415/85

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-06-01
INSDC accession S

Submission details

Submission ID
AY905627.1.S
Submitting group
Date submitted
2026-10-12 08:38:21 UTC
Date released
2026-10-12 08:39:13 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
47
Length S
450 (26.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G189A
  • T199C
  • G202A
  • C217T
  • G229A
  • C235T
  • A247G
  • G271A
  • A284G
  • C295T
  • A322G
  • A327G
  • A331C
  • G346A
  • A349G
  • C361T
  • T364C
  • C370T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R45K
  • NP:I77V
  • NP:K91R
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:L179Q
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue