This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PYS4.1

Display Name: France/LOC_000PYS4.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
1008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 07:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1629
Total SNPs S
125
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
97.37%

Submission details

Submission ID
PV976893.1.S
Submitting group
Date submitted
2025-10-14 07:07:07 UTC
Date released
2025-10-14 07:14:59 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G67A
  • S:G99A
  • S:C166T
  • S:C178A
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:C235T
  • S:C241T
  • S:C244T
  • S:A247G
  • S:G262A
  • S:G271A
  • S:C295T
  • S:A298G
  • S:A322G
  • S:G346A
    • Deletions
    None
    Insertions
    ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:R45K
  • NP:S52G
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:S301G
  • NP:K428R
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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